Search Results ( 17 studies )

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#STUDYSUBMISSIONSTUDY_TITLESTUDY_TYPEORGANISM BASESSUBMITTEDCENTER_NAME
1 ERP013648 ERA548624 The fecal microbiota of free-ranging brown bears was collected during their active phase (summer) and hibernation (winter). Germfree mice were colonized with the seasonal bear microbiota. Bear fecal and mouse cecal microbiota were analyzed using 16S profiling. Other Mus musculus
Ursus arctos
3.1G UNIVERSITY OF KIEL
2 ERP014682 ERA587855 Ancient DNA was extracted from nine leather and fur fragments of the clothes and quiver. These were enriched for mitochondrial DNA from which we sequenced six complete and three partially complete ancient mitogenomes. These results allowed us to map the furs and leathers to their species origin, with a haplotype resolution, for the Iceman’s hat, coat, leggings, loincloth, quiver and shoelace. This has enabled us to confirm the use of both wild and domestic animal sources, and their relation to modern populations. This high-resolution analysis further allowed us to authenticate the data by quantifying the degree of post mortem sequence damage (typical for ancient DNA) and to exclude contaminating sequences from subsequent analyses. Other Bos taurus
Capra hircus
Capreolus capreolus
Ovis aries
Ursus arctos
2.1G Institute for mummies and Iceman
3 ERP021512 ERA814228
ERA814746
Extending the spectrum of DNA sequences retrieved from ancient bones and teeth Other Bison bison
Bos mutus
Delphinapterus leucas
Ursus arctos
Ursus spelaeus
22.8G Max Planck Institute for Evolutionary Anthroplogy
4 ERP109572 ERA1526770 Shotgun genome sequencing of 4 ancient cave bears (Ursus spelaeus complex), 1 ancient brown bear and 3 modern brown bears (Ursus arctos) Other Ursus arctos
Ursus ingressus
Ursus kudarensis
Ursus spelaeus
Ursus spelaeus eremus
423.7G UNIVERSITY OF POTSDAM
5 ERP121451 ERA2530244 Large scale metagenome assembly reveals novel animal-associated microbial diversity Other Abramis brama
Acanthiza uropygialis
Accipiter nisus
Acrocephalus scirpaceus
Aepyceros melampus
Alburnus alburnus
Anas crecca
Anas platyrhynchos
Anguis fragilis
Anser anser
Apodemus flavicollis
Apodemus sylvaticus
Ardea cinerea
Asio otus
Balaenoptera borealis
Blicca bjoerkna
Bos frontalis
Bos taurus
Bradypus variegatus
Branta leucopsis
Bufo bufo
Bufotes viridis
Camelus dromedarius
Camelus ferus
Canis aureus
Canis lupus
Canis lupus arctos
Canis lupus familiaris
Capra hircus
Capra ibex
Capreolus capreolus
Caprimulgus europaeus
Carassius gibelio
Castor fiber
Ceratotherium simum
Cervus canadensis canadensis
Cervus elaphus
Chalcites basalis
Chloris chloris
Chlorocebus pygerythrus
Choloepus didactylus
Choloepus hoffmanni
Chondrostoma nasus
Chrysococcyx basalis
Ciconia ciconia
Circus aeruginosus
Connochaetes taurinus
Corvus corone
Corvus frugilegus
Cricetus cricetus
Crocidura suaveolens
Crocodylus moreletii
Crocodylus niloticus
Cygnus olor
Cyprinus carpio
Dama dama
Delichon urbicum
Dendrocopos major
Didelphis marsupialis
Dromaius novaehollandiae
Eliomys quercinus
Eolophus roseicapilla
Eptesicus sagittula
Equus burchellii quagga
Equus caballus
Equus hemionus
Equus hemionus kulan
Equus przewalskii
Erinaceus europaeus
Esox lucius
Falco tinnunculus
Felis catus
Gallus gallus
Gazella bennettii
Gazella subgutturosa
Giraffa camelopardalis
Glis glis
Gorilla gorilla gorilla
Gymnocephalus cernua
Haliaeetus albicilla
Halichoerus grypus
Hemidactylus frenatus
Heteromys desmarestianus
Hippopotamus amphibius
Homo sapiens
Hylacola cauta
Lacerta agilis
Lagenorhynchus albirostris
Lagopus muta
Lepus europaeus
Lepus tolai
Leuciscus aspius
Leuciscus idus
Loxodonta africana
Lutra lutra
Lynx lynx
Lyrurus tetrix
Macropus fuliginosus
Macropus giganteus
Marmota marmota
Martes foina
Martes martes
Melanomys caliginosus
Meleagris gallopavo
Meles meles
Mesoplodon bidens
Mus musculus
Mustela eversmannii
Mustela nivalis
Mustela putorius
Myodes glareolus
Natrix natrix
Nomascus gabriellae
Nomascus siki
Notamacropus eugenii
Nyctalus noctula
Nyctereutes procyonoides
Nycticebus pygmaeus
Odocoileus virginianus
Oncorhynchus mykiss
Oryctolagus cuniculus
Otolemur crassicaudatus
Ovis aries
Ovis aries musimon
Panthera leo
Panthera pardus
Papio ursinus
Parus major
Perca fluviatilis
Phalacrocorax carbo
Phascolarctos cinereus
Phasianus colchicus
Philander opossum
Phoca vitulina
Phocoena phocoena
Phodopus sungorus
Phylloscopus collybita
Pica pica
Pipistrellus pipistrellus
Podarcis siculus
Pogona vitticeps
Potos flavus
Procyon lotor
Proechimys semispinosus
Prunella modularis
Psammomys obesus
Pygathrix nemaeus
Rallus aquaticus
Rana dalmatina
Rana temporaria
Reithrodontomys fulvescens
Rheomys raptor
Rhinoceros unicornis
Rupicapra rupicapra
Rusa unicolor
Rutilus rutilus
Salamandra atra
Salmo trutta
Salmo trutta fario
Salvelinus fontinalis
Sander lucioperca
Scardinius erythrophthalmus
Sciurus vulgaris
Scolopax rusticola
Smutsia temminckii
Sorex alpinus
Spermophilus citellus
Squalius cephalus
Strix aluco
Strix uralensis
Sus scrofa
Sus scrofa domesticus
Sylvia atricapilla
Syncerus caffer
Tachyglossus aculeatus
Tamandua mexicana
Testudo hermanni boettgeri
Trachypithecus delacouri
Trachypithecus hatinhensis
Trichosurus vulpecula
Tringa glareola
Tupaia belangeri
Turdus merula
Turdus philomelos
Ursus arctos
Vipera ursinii
Vulpes vulpes
Zamenis longissimus
Zingel zingel
365.7G MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY
6 SRP013920 SRA054912 Genome-scale sequencing of three bear species Other Ursus americanus
Ursus arctos
Ursus maritimus
1.7T 2012-06-22 BioProject
7 SRP021061 SRA073410 Ursus Genome sequencing, 10 individuals Other Ursus americanus
Ursus arctos
Ursus maritimus
292.7G BioProject
8 SRP023544 SRA082732 Ursus arctos RRL sequencing Other Ursus arctos 20.3G BioProject
9 SRP027340 SRA092289 Ursus maritimus Genome sequencing and assembly Whole Genome Sequencing Ursus arctos
Ursus maritimus
2.9T BioProject
10 SRP050552 SRA209030 Transcriptional profiling of grizzly bear skeletal muscle before and during hibernation Transcriptome Analysis Ursus arctos 31.1G GEO
11 SRP051658 SRA208168 Ursus arctos Genome sequencing Whole Genome Sequencing Ursus arctos 73.6G BioProject
12 SRP078422 SRA439510 Ursus arctos Raw sequence reads Whole Genome Sequencing Ursus arctos 333.1M BioProject
13 SRP113775 SRA593485 Extreme genomic effects in an isolated bears population Other Ursus arctos 534G BioProject
14 SRP119422 SRA617004 Ursus arctos Transcriptome or Gene expression Transcriptome Analysis Ursus arctos 218.4G BioProject
15 SRP151062 SRA726265 Ursus arctos paleogenomic sequencing Other Ursus arctos 68.4G BioProject
16 SRP163280 SRA788691 Ursus arctos dextrose reversal Other Ursus arctos 62.1G BioProject
17 SRP175152 SRA1028153
SRA1043706
SRA1043709
SRA1054081
SRA1082475
SRA1082482
SRA1111966
SRA1112183
SRA1112255
SRA1165250
SRA1180508
SRA1180520
SRA1180659
SRA1180663
SRA1180664
SRA1180665
SRA1181868
SRA1181892
SRA1219341
SRA1237403
SRA830118
SRA851518
SRA962022
SRA962023
SRA983534
DNA Zoo Other Acinonyx jubatus
Acropora millepora
Aeorestes cinereus
Agapostemon virescens
Agaricus bisporus
Ailurus fulgens
Allenopithecus nigroviridis
Alligator mississippiensis
Alligator sinensis
Aonyx cinereus
Aplysia californica
Aquila chrysaetos
Arachis hypogaea
Augochlora pura
Augochlorella aurata
Axis porcinus
Balaenoptera edeni
Bassariscus sumichrasti
Bison bison
Bombyx mori
Brachyptera putata
Branchiostoma lanceolatum
Brassica rapa
Caenorhabditis elegans
Camelus dromedarius
Canis lupus dingo
Canis lupus familiaris
Castor canadensis
Casuarius casuarius
Cavia porcellus
Cebuella pygmaea
Cephalorhynchus commersonii
Ceratotherium simum
Chelonia mydas
Chiloscyllium punctatum
Chinchilla sp.
Choloepus hoffmanni
Chrysocyon brachyurus
Ciona intestinalis
Clogmia albipunctata
Clonorchis sinensis
Coendou prehensilis
Connochaetes taurinus
Cricetulus griseus
Cristatella mucedo
Crocuta crocuta
Cryptoprocta ferox
Cucurbita maxima
Cucurbita moschata
Cucurbita pepo
Delphinapterus leucas
Diceros bicornis
Didelphis virginiana
Dolomedes plantarius
Dromaius novaehollandiae
Eidolon dupreanum
Eidolon helvum
Elephas maximus
Enhydra lutris
Eptesicus fuscus
Equus asinus
Equus burchellii quagga
Equus zebra
Erethizon dorsatum
Erignathus barbatus
Eschrichtius robustus
Eubalaena australis
Eubalaena glacialis
Eulemur flavifrons
Eulemur mongoz
Felis nigripes
Fukomys damarensis
Gallus gallus
Giraffa camelopardalis
Globicephala melas
Grampus griseus
Gymnobelideus leadbeateri
Gymnogyps californianus
Halictus ligatus
Halictus quadricinctus
Halictus rubicundus
Helarctos malayanus
Hemaris fuciformis
Hippotragus niger
Hydrochoerus hydrochaeris
Hypsibius dujardini
Impatiens glandulifera
Lagenorhynchus obliquidens
Lama glama
Lasioglossum albipes
Lasioglossum calceatum
Lasioglossum figueresi
Lasioglossum leucozonium
Lasioglossum malachurum
Lasioglossum marginatum
Lasioglossum oenotherae
Lasioglossum pauxillum
Lasioglossum vierecki
Lasioglossum zephyrum
Lethenteron camtschaticum
Lichenostomus cassidix
Litocranius walleri
Lontra canadensis
Lutra lutra
Lycaon pictus
Macaca fuscata
Macquaria australasica
Macropus fuliginosus
Macropus giganteus
Mandrillus sphinx
Manis javanica
Manis pentadactyla
Mastacomys fuscus
Medicago truncatula
Mesocricetus auratus
Mesoplodon densirostris
Mesoplodon europaeus
Mesoplodon stejnegeri
Mirounga angustirostris
Monodelphis domestica
Moschus berezovskii
Muntiacus muntjak
Muntiacus reevesi
Mustela nigripes
Mustela putorius furo
Myotis lucifugus
Myotis septentrionalis
Nanger dama
Nasua narica
Neofelis nebulosa
Nomia melanderi
Notamacropus eugenii
Odobenus rosmarus
Odocoileus virginianus
Okapia johnstoni
Orcinus orca
Orycteropus afer
Oryctolagus cuniculus
Oryx dammah
Osmia bicornis
Osphranter rufus
Pachyuromys duprasi
Panthera onca
Panthera pardus
Panthera tigris
Panthera uncia
Patagioenas fasciata
Pecten maximus
Peponocephala electra
Peromyscus crinitus
Peromyscus eremicus
Peromyscus nasutus
Petunia axillaris
Petunia exserta
Phalacrocorax auritus
Phalanger gymnotis
Phataginus tricuspis
Phoca largha
Phoca vitulina
Phocoena phocoena
Pleurobrachia bachei
Potos flavus
Procavia capensis
Procyon lotor
Propithecus coquereli
Pseudocheirus occidentalis
Pseudochirops corinnae
Pseudochirops cupreus
Pseudomys desertor
Pteronura brasiliensis
Pteropus rufus
Pteropus vampyrus
Puma concolor
Pygocentrus nattereri
Python bivittatus
Rhea americana
Rhinoceros unicornis
Rhodnius prolixus
Rousettus madagascariensis
Rubus argutus
Rubus ulmifolius
Saccharomyces cerevisiae
Saimiri boliviensis
Salvator merianae
Sciurus vulgaris
Scyliorhinus canicula
Setonix brachyurus
Steno bredanensis
Strix occidentalis
Strongylocentrotus purpuratus
Struthio camelus
Suricata suricatta
Sylvilagus bachmani
Tapirus indicus
Tapirus terrestris
Tribolium castaneum
Trichechus manatus
Trifolium subterraneum
Triticum aestivum
Tursiops aduncus
Tursiops truncatus
Tympanuchus cupido
Uromys caudimaculatus
Ursus americanus
Ursus arctos
Ursus maritimus
Vespa velutina
Vicugna pacos
Vombatus ursinus
Vulpes vulpes
Xenopus laevis
20.3T BioProject