Search Results ( 17 studies )

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#STUDYSUBMISSIONSTUDY_TITLESTUDY_TYPEORGANISM BASESSUBMITTEDCENTER_NAME
1 ERP012971 ERA528470 Arabidopsis thaliana culture collections of leaf- and root-associated bacteria (WGS raw reads) Other Achromobacter
Acidovorax
Acinetobacter
Aeromicrobium
Afipia
Agreia
Agromyces
Altererythrobacter
Aminobacter
Angustibacter
Arthrobacter
Aurantimonas
Aureimonas
Bacillus <firmicutes>
Bosea <a-proteobacteria>
Bradyrhizobium
Brevibacillus
Brevundimonas
Burkholderia
Caulobacter
Cellulomonas
Chryseobacterium
Curtobacterium
Deinococcus
Devosia
Duganella
Dyadobacter
Ensifer
Erwinia
Exiguobacterium
Flavobacterium
Frateuria
Frigoribacterium
Frondihabitans
Geodermatophilus
Hydrogenophaga
Janibacter
Kitasatospora
Knoellia
Leifsonia
Lysobacter
Marmoricola
Massilia
Mesorhizobium
Methylibium
Methylobacterium
Methylophilus
Microbacterium
Modestobacter
Mycobacterium
Nocardia
Nocardioides
Noviherbaspirillum
Novosphingobium
Oerskovia
Paenibacillus
Pedobacter
Pelomonas
Phenylobacterium
Phycicoccus
Plantibacter
Pseudolabrys
Pseudomonas
Pseudorhodoferax
Pseudoxanthomonas
Ramlibacter
Rathayibacter
Rhizobacter
Rhizobium
Rhodanobacter
Rhodococcus <high GC Gram+>
Sanguibacter
Serratia
Sphingobium
Sphingomonas
Sphingopyxis
Stenotrophomonas
Streptomyces
Terrabacter
Tetrasphaera
Variovorax
Williamsia
Xanthomonas
Xylophilus
Yonghaparkia
526.5G MPIPZ
2 SRP076676 SRA434349
SRA449528
SRA695767
Mycobacterium tuberculosis Raw sequence reads Other Mycobacterium
Mycobacterium kansasii
Mycobacterium tuberculosis
Mycobacterium xenopi
Mycobacteroides abscessus
780.7G BioProject
3 SRP082998 SRA455618
SRA483747
Mycobacterium chimaera Genome sequencing and assembly Other Mycobacterium
Mycobacterium intracellulare subsp. chimaera
102.7G BioProject
4 SRP092314 SRA1089575
SRA487467
Study of bacteria which catabolize steroids Other Mycobacterium
Pimelobacter simplex
16.1G BioProject
5 SRP110736 SRA642097
SRA642369
soil Raw sequence reads Metagenomics Acaulospora
Acidibacter
Adhaeribacter
Agaricicola
Agromyces
Allomyces
Altererythrobacter
Alternaria
Amanita
Aphanoascus
Arenimonas
Arthrobacter
Aureobasidium
Bacillus sp. (in: Bacteria)
Blastocatella
Blastocladiella
Blastococcus
Bryobacter
Candidatus Entotheonella sp.
Candidatus Halyseosphaera sp.
Chryseolinea
Chrysosporium
Chthoniobacter
Cladosporium
Colletotrichum
Coprinellus
Cryptococcus sp. (in: Fungi)
Cystofilobasidium
Epicoccum
Exophiala
Ferruginibacter
Flavisolibacter
Fusarium
Gaiella
Gemmata
Gemmatimonadetes bacterium
Gemmatimonas
Gymnoascus
Haliangium
Heydenia
Hymenoscyphus
Iamia
Kernia
Leptosphaeria
Leptosphaerulina
Leucothecium
Lophiotrema
Lysobacter
Marmoricola
Massilia
Microdochium
Microvirga
Minimedusa
Monographella
Mortierella
Mrakia
Mucor
Mycobacterium
Nitrosospira
Nitrospiraceae bacterium
Nocardioides
Oidiodendron
Paenibacillus
Paraconiothyrium
Paraphysoderma
Passalora
Pedomicrobium
Penicillium
Periconia
Peziza
Pirellula
Planctomyces
Pontibacter
Pseudogymnoascus
Pseudonocardia
Pseudopithomyces
Pseudoxanthomonas
Puccinia
Pyrenochaetopsis
Ramlibacter
Rubellimicrobium
Rubrobacter
Scopulariopsis
Skermanella
Solirubrobacter
Sphingomonas
Stagonosporopsis
Steroidobacter
Streptomyces
Talaromyces
Tausonia
Tetracladium
Thermomonas
Torula
Usnea
Variibacter
2.7G BioProject
6 SRP117784 SRA608812 Mycobacteria species Raw sequence reads Other Mycobacterium
Mycobacterium angelicum
Mycobacterium arosiense
Mycobacterium avium
Mycobacterium colombiense
Mycobacterium gordonae
Mycobacterium intracellulare
Mycobacterium intracellulare subsp. chimaera
Mycobacterium kansasii
Mycobacterium lentiflavum
Mycobacterium malmoense
Mycobacterium marinum
Mycobacterium marseillense
Mycobacterium palustre
Mycobacterium paraffinicum
Mycobacterium shimoidei
Mycobacterium simiae
Mycobacterium sp. 'ratisbonense'
Mycobacterium szulgai
Mycobacterium triplex
Mycobacterium tuberculosis
Mycobacterium tuberculosis variant africanum
Mycobacterium tuberculosis variant bovis
Mycobacterium xenopi
Mycobacteroides abscessus
Mycobacteroides chelonae
Mycobacteroides immunogenum
Mycolicibacterium brisbanense
Mycolicibacterium farcinogenes
Mycolicibacterium fortuitum
Mycolicibacterium llatzerense
Mycolicibacterium mageritense
Mycolicibacterium peregrinum
Mycolicibacterium porcinum
Mycolicibacterium septicum
Mycolicibacterium smegmatis
745.1G BioProject
7 SRP187028 SRA1209384
SRA853015
SRA860034
Mycobacteroides abscessus Other Mycobacterium 145.6G BioProject
8 SRP213857 SRA918871 Bacterial wilt suppressive communities from tomato rhizosphere Other Aeromicrobium
Agrobacterium
Asticcacaulis
Burkholderia
Candidatus Protochlamydia
Candidatus Xiphinematobacter
Cellulomonas
Chitinophaga
Devosia
Fimbriimonas
Gemmata
Hyphomicrobium
Legionella
Massilia
Mesorhizobium
Microbacterium
Mycobacterium
Nocardioides
Opitutus
Paenibacillus
Pedobacter
Pimelobacter
Planctomyces
Pseudomonas
Ramlibacter
Rhodoplanes
Sediminibacterium
Serratia
Sphingomonas
Tatlockia
1.1G BioProject
9 SRP221909 SRA962878 microbial electrolysis cell sequencing Metagenomics Acidobacteria bacterium OLB17
Acidobacteriaceae bacterium LX51
Acinetobacter johnsonii
Actinobacteria bacterium IMCC26207
Aliarcobacter cryaerophilus
Aminicenantes bacterium clone OPB95
Andreesenia angusta
Arenimonas
Bacteroidetes bacterium OLB12
Bacteroidetes bacterium OLB9
Bacteroidetes bacterium PPf50E2
Brevundimonas diminuta
Brevundimonas olei
Candidatus Halomonas phosphatis
Candidatus Microthrix
Candidatus Microthrix parvicella
Chloroflexi bacterium OLB14
Chujaibacter
Clostridium tunisiense
Comamonas denitrificans
Desulfuromonas acetexigens
Dokdonella ginsengisoli
Geobacter
Geobacter anodireducens
Geobacter soli
Ilumatobacter
Limosilactobacillus mucosae
Methanobacterium
Methanoculleus chikugoensis
Methanothrix soehngenii
Mycobacterium
Nitrosomonas europaea
Proteiniclasticum
Proteiniclasticum ruminis
Proteiniphilum
Rhodococcus ruber
Sedimentibacter
Solirubrobacterales bacterium 67-14
Sphingobacteriia bacterium WF20
Sphingopyxis granuli
Treponema zuelzerae
bacterium PM5-3
bacterium TG159
bacterium enrichment culture clone BBMC-12
bacterium enrichment culture clone DPHB03
bacterium enrichment culture clone E29
bacterium enrichment culture clone LDC-12
bacterium rM17
1.4G BioProject
10 SRP239253 SRA1018639
SRA1037786
Whole genome sequences of mycobacterium aurum Other Arthrobacter sedimenti
Mycobacterium
Oryza
Tapinoma indicum
metagenome
18.4G BioProject
11 SRP241514 SRA1024501 rhizosphere metagenome Raw sequence reads Metagenomics Acidibacter
Aciditerrimonas
Acinetobacter
Acrocarpospora
Actinocorallia
Actinomadura
Actinophytocola
Actinoplanes
Adhaeribacter
Aeromicrobium
Aeromonas
Agaricicola
Agromyces
Alcaligenaceae
Alloactinosynnema
Altererythrobacter
Amycolatopsis
Aquabacterium
Aquicella
Arenimonas
Azohydromonas
Azotobacter
Bauldia
Bdellovibrionaceae
Blastocatella
Blastococcus
Blastopirellula
Bordetella
Bradyrhizobium
Brevibacillus
Brevundimonas
Brucellaceae
Bryobacter
Catellatospora
Caulobacteraceae
Cellulosimicrobium
Chitinimonas
Chitinophaga
Chitinophagaceae
Chryseobacterium
Chryseolinea
Chthonomonadaceae
Chthonomonas
Cohnella
Comamonadaceae
Constrictibacter
Coxiellaceae
Craurococcus
Crocinitomix
Crossiella
Cryomorphaceae
Cryptosporangiaceae
Cryptosporangium
Cupriavidus
Curtobacterium
Cyclobacteriaceae
Dactylosporangium
Delftia
Desulfurellaceae
Devosia
Dokdonella
Domibacillus
Dongia
Dyadobacter
Empedobacter
Ensifer
Enterobacteriaceae
Erythrobacteraceae
Ferrovibrio
Ferruginibacter
Fibrobacteraceae
Fictibacillus
Fimbriimonadaceae
Flavihumibacter
Flavisolibacter
Flavitalea
Flavobacterium
Flindersiella
Fluviicola
Frankia
Frankiaceae
Gaiella
Gaiellaceae
Gemmata
Gemmatimonadaceae
Gemmatimonas
Gemmatirosa
Geobacteraceae
Geodermatophilaceae
Geodermatophilus
Geothermobacter
Glycomyces
Glycomycetaceae
Haliangium
Herminiimonas
Hoeflea
Holosporaceae
Hydrogenophaga
Hyphomicrobiaceae
Hyphomicrobium
Iamia
Inquilinus
Intrasporangiaceae
Isosphaera
Janibacter
Kaistia
Kibdelosporangium
Kineosporia
Kineosporiaceae
Kribbella
Legionella
Legionellaceae
Lentzea
Longimicrobiaceae
Longispora <high GC Gram+>
Luteimonas
Lysinimonas
Lysobacter
Marmoricola
Massilia
Mesorhizobium
Methylibium
Methylobacteriaceae
Methylobacterium
Methylophilaceae
Methylotenera
Microbacteriaceae
Microbacterium
Micrococcaceae
Microlunatus
Micromonosporaceae
Microvirga
Moheibacter
Moraxellaceae
Mycobacteriaceae
Mycobacterium
Myxococcaceae
Myxococcus
Nakamurella
Nakamurellaceae
Nannocystaceae
Nannocystis
Niastella
Nitrosomonadaceae
Nocardia
Nocardiaceae
Nocardioidaceae
Nocardioides
Nonomuraea
Nordella
Novosphingobium
Oceanospirillaceae
Ohtaekwangia
Oligoflexaceae
Olivibacter
Opitutaceae
Opitutus
Oxalobacteraceae
Paenarthrobacter
Paenibacillus
Paludibaculum
Pantoea
Parafilimonas
Patulibacter
Paucimonas
Pedobacter
Pedomicrobium
Phaselicystidaceae
Phaselicystis
Phenylobacterium
Phreatobacter
Phycisphaeraceae
Phyllobacteriaceae
Phyllobacterium
Phytohabitans
Phytomonospora
Pirellula
Planctomyces
Planctomycetaceae
Planococcaceae
Planomonospora
Polaromonas
Polyangiaceae
Polycyclovorans
Promicromonospora
Promicromonosporaceae
Propionibacteriaceae
Pseudarthrobacter
Pseudenhygromyxa
Pseudochrobactrum
Pseudoduganella
Pseudofulvimonas
Pseudohongiella
Pseudomonas
Pseudonocardia
Pseudoxanthomonas
Psychroglaciecola
Ralstonia
Ramlibacter
Reyranella
Rhizobacter
Rhizobium
Rhizocola
Rhizomicrobium
Rhizorhapis
Rhodomicrobium
Rhodopirellula
Rhodoplanes
Roseiflexaceae
Roseiflexus
Roseomonas
Rubellimicrobium
Rubrobacter
Salinisphaeraceae
Sandaracinaceae
Sandaracinus
Schlesneria
Sciscionella
Shimazuella
Singulisphaera
Sinosporangium
Skermanella
Solirubrobacter
Solitalea
Sorangium
Sphingobacterium
Sphingobium
Sphingomonas
Sphingopyxis
Staphylococcus
Starkeya
Stenotrophobacter
Stenotrophomonas
Steroidobacter
Streptomyces
Streptosporangium
Sulfurifustis
Tahibacter
Taibaiella
Tepidisphaeraceae
Terrabacter
Terrimonas
Thermomonosporaceae
Variibacter
Variovorax
Vicinamibacter
Virgisporangium
Xanthomonadaceae
Zavarzinella
7.1G BioProject
12 SRP262387 SRA1077225 Mycobacterium Tuberculosis Genome Sequencing Other Mycobacterium 18.8G BioProject
13 SRP262395 SRA1077236 Role of biological soil amendment (GS: garlic stalk) and microbial inoculation (AM: Arbuscular mycorrhizal fungi) for soil properties, crop yield and microbiome structure. Other Acinetobacter
Blastococcus
Enterococcus
Exiguobacterium
Flavobacterium
Lysobacter
Mycobacterium
Pirellula
Planctomyces
Sphingomonas
Streptomyces
Variibacter
323.1M BioProject
14 SRP272831 SRA1101494 Prevalence of Renibacterium salmoninarum and Mycobacterium sp. in Austrian waters Other Mycobacterium 15.6K BioProject
15 SRP275978 SRA1108375 Garlic substrate induces cucumber growth development and decreases Fusarium wilt through regulation of soil microbial community structure and diversity in replanted disturbed soil Other Acinetobacter
Blastococcus
Enterococcus
Exiguobacterium
Flavobacterium
Lysobacter
Mycobacterium
Pirellula
Planctomyces
Sphingomonas
Streptomyces
Variibacter
304.9M BioProject
16 SRP278623 SRA1116443 gut microbiota changes from Folsomia candida - mites food chain Other Aeromicrobium
Alcaligenaceae
Aquabacterium
Arthrobacter
Bacillaceae
Bradyrhizobium
Burkholderia
Chitinophaga
Chitinophagaceae
Comamonas
Cupriavidus
Denitratisoma
Dyadobacter
Enterobacteriaceae
Eubacterium
Flavihumibacter
Flavobacterium
Hydrotalea
Hyphomicrobium
Mesorhizobium
Methylobacterium
Micromonospora
Mycobacterium
Neisseriaceae
Niabella
Nitrobacter
Nocardioides
Ochrobactrum
Patulibacter
Pelomonas
Propionibacterium
Pseudonocardia
Pseudopedobacter
Ralstonia
Rhizobiaceae
Rhizobium
Rubrobacter
Sphingobacteriaceae
Sphingobacterium
Sphingobium
Sphingomonas
Sphingopyxis
Staphylococcus
Streptomyces
Taibaiella
Terrimonas
Weissella
Wolbachia
185.5M BioProject
17 SRP308447 SRA1200831
SRA1201490
Gaseous alkane driven bio-reduction Other Azospira
Dechloromonas
Mycobacterium
Rhodocyclaceae
biofilm metagenome
BioProject