Search Results ( 11 studies )

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#STUDYSUBMISSIONSTUDY_TITLESTUDY_TYPEORGANISM BASESSUBMITTEDCENTER_NAME
1 DRP000755 DRA000724 Whole genome analysis of Bacteroides sp. VE202-11 Whole Genome Sequencing Bacteroides sp. 359.4M 2012-09-22 UT_COB
2 DRP004026 DRA006134 SAG analysis of mouse fecal flora Other Bacteroidales bacterium
Bacteroides sp.
Barnesiella sp.
Clostridiales bacterium
Desulfovibrio sp.
Firmicutes bacterium
Lachnospiraceae bacterium
Prevotella sp. MGM1
Prevotella sp. MGM2
bacterium
feces metagenome
13G 2017-08-24 WASEDA
3 ERP000808 ERA071208
ERA144422
MetaHIT_single_cell Whole Genome Sequencing Alistipes indistinctus
Bacteroides sp.
Clostridium sp.
Eubacteriales
Eubacterium sp.
Lactobacillus sp.
Prevotella melaninogenica
Prevotella sp.
Prevotella stercorea
Roseburia
Roseburia hominis
Ruminococcus sp.
[Clostridium] spiroforme
[Eubacterium] rectale
[Eubacterium] siraeum
unidentified
87.3G SC
4 SRP130174 SRA647935
SRA647941
SRA648474
SRA648617
Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive. Other Acetivibrio thermocellus
Acetobacteraceae bacterium
Acetobacterium sp.
Acholeplasmataceae bacterium
Acholeplasmatales bacterium
Achromobacter sp.
Acidaminococcaceae bacterium
Acidimicrobiaceae bacterium
Acidimicrobium sp.
Acidobacteria bacterium
Acidobacterium sp.
Acidovorax sp.
Acinetobacter baumannii
Acinetobacter johnsonii
Acinetobacter junii
Acinetobacter lwoffii
Acinetobacter nosocomialis
Acinetobacter pittii
Acinetobacter radioresistens
Acinetobacter schindleri
Acinetobacter sp.
Acinetobacter ursingii
Actinobacteria bacterium
Advenella kashmirensis
Aequorivita sp.
Aerococcaceae bacterium
Aerococcus urinaeequi
Aeromonas salmonicida
Aeromonas sp.
Afipia sp.
Agrobacterium sp.
Akkermansia muciniphila
Akkermansia sp.
Alcaligenaceae bacterium
Alcaligenes faecalis
Alcanivorax sp.
Algoriphagus sp.
Aliarcobacter skirrowii
Alistipes communis
Alistipes putredinis
Alistipes sp.
Alkalibacterium sp.
Alphaproteobacteria bacterium
Alteromonas australica
Alteromonas macleodii
Alteromonas mediterranea
Alteromonas sp.
Aminobacterium sp.
Amoebophilaceae bacterium
Anabaena sp. UBA12330
Anaerolinea thermolimosa
Anaerolineaceae bacterium
Anaerolineae bacterium
Anaerostipes hadrus
Anaerovibrio sp.
Aquificaceae bacterium
Aquiluna sp.
Arenibacter sp.
Arenimonas sp.
Armatimonadetes bacterium
Arthrobacter sp.
Atlantibacter hermannii
Bacillus pumilus
Bacillus sp. (in: Bacteria)
Bacteroidales bacterium
Bacteroides cellulosilyticus
Bacteroides fragilis
Bacteroides graminisolvens
Bacteroides ovatus
Bacteroides sp.
Bacteroides stercoris
Bacteroides thetaiotaomicron
Bacteroides uniformis
Bacteroidetes bacterium
Balneola sp.
Balneolaceae bacterium
Barnesiella intestinihominis
Barnesiella sp.
Bavariicoccus seileri
Bdellovibrionales bacterium
Betaproteobacteria bacterium
Bifidobacterium dentium
Bifidobacterium longum
Bifidobacterium sp.
Blastocatellia bacterium
Blautia sp.
Bradyrhizobium sp.
Brevibacillus sp.
Brevibacterium sp.
Brevundimonas diminuta
Brevundimonas sp.
Brochothrix thermosphacta
Brucella anthropi
Brucella melitensis
Bryobacterales bacterium
Burkholderiales bacterium
Butyricimonas sp.
Butyricimonas virosa
Butyrivibrio sp.
Caldanaerobacter subterraneus
Candidatus Accumulibacter sp.
Candidatus Acetothermia bacterium
Candidatus Amesbacteria bacterium
Candidatus Aminicenantes bacterium
Candidatus Andersenbacteria bacterium
Candidatus Atribacteria bacterium
Candidatus Azambacteria bacterium
Candidatus Beckwithbacteria bacterium
Candidatus Berkelbacteria bacterium
Candidatus Blackburnbacteria bacterium
Candidatus Campbellbacteria bacterium
Candidatus Cloacimonas sp.
Candidatus Collierbacteria bacterium
Candidatus Competibacteraceae bacterium
Candidatus Daviesbacteria bacterium
Candidatus Delongbacteria bacterium
Candidatus Dependentiae bacterium
Candidatus Edwardsbacteria bacterium
Candidatus Falkowbacteria bacterium
Candidatus Giovannonibacteria bacterium
Candidatus Gracilibacteria bacterium
Candidatus Jacksonbacteria bacterium
Candidatus Kaiserbacteria bacterium
Candidatus Kerfeldbacteria bacterium
Candidatus Komeilibacteria bacterium
Candidatus Latescibacteria bacterium
Candidatus Levybacteria bacterium
Candidatus Magasanikbacteria bacterium
Candidatus Margulisbacteria bacterium
Candidatus Marinimicrobia bacterium
Candidatus Microthrix parvicella
Candidatus Moranbacteria bacterium
Candidatus Nomurabacteria bacterium
Candidatus Omnitrophica bacterium
Candidatus Pacebacteria bacterium
Candidatus Peregrinibacteria bacterium
Candidatus Peribacter riflensis
Candidatus Peribacteria bacterium
Candidatus Poribacteria bacterium
Candidatus Portnoybacteria bacterium
Candidatus Riflebacteria bacterium
Candidatus Rokubacteria bacterium
Candidatus Saccharibacteria bacterium
Candidatus Shapirobacteria bacterium
Candidatus Staskawiczbacteria bacterium
Candidatus Sumerlaeota
Candidatus Taylorbacteria bacterium
Candidatus Uhrbacteria bacterium
Candidatus Veblenbacteria bacterium
Candidatus Vogelbacteria bacterium
Candidatus Wallbacteria bacterium
Candidatus Wildermuthbacteria bacterium
Candidatus Woesebacteria bacterium
Candidatus Wolfebacteria bacterium
Candidatus Yanofskybacteria bacterium
Candidatus Yonathbacteria bacterium
Candidatus Zambryskibacteria bacterium
Catenibacterium sp.
Cellvibrio sp.
Cellvibrionales bacterium
Chitinophagaceae bacterium
Chlorobaculum sp.
Chlorobium sp.
Chloroflexi bacterium
Chloroflexus aurantiacus
Chromatiaceae bacterium
Chryseobacterium carnipullorum
Chryseobacterium indologenes
Chryseobacterium sp.
Citreicella sp.
Citrobacter freundii
Clostridiaceae bacterium
Clostridiales bacterium
Clostridiales bacterium UBA8153
Clostridiales bacterium UBA8960
Clostridiales bacterium UBA9856
Clostridiales bacterium UBA9857
Clostridium sp.
Cobetia sp.
Collinsella aerofaciens
Collinsella sp.
Colwellia sp.
Comamonadaceae bacterium
Comamonas kerstersii
Coprobacter fastidiosus
Coprococcus sp.
Coprothermobacter sp.
Coriobacteriia bacterium
Corynebacterium casei
Corynebacterium flavescens
Corynebacterium nuruki
Corynebacterium stationis
Corynebacterium variabile
Coxiellaceae bacterium
Crocinitomicaceae bacterium
Cryomorphaceae bacterium
Culturomica sp.
Cupriavidus sp.
Curvibacter sp.
Cutibacterium acnes
Cyanobacteria bacterium UBA10660
Cyanobacteria bacterium UBA11049
Cyanobacteria bacterium UBA11148
Cyanobacteria bacterium UBA11149
Cyanobacteria bacterium UBA11153
Cyanobacteria bacterium UBA11159
Cyanobacteria bacterium UBA11162
Cyanobacteria bacterium UBA11166
Cyanobacteria bacterium UBA11366
Cyanobacteria bacterium UBA11367
Cyanobacteria bacterium UBA11368
Cyanobacteria bacterium UBA11369
Cyanobacteria bacterium UBA11370
Cyanobacteria bacterium UBA11371
Cyanobacteria bacterium UBA11372
Cyanobacteria bacterium UBA11440
Cyanobacteria bacterium UBA11991
Cyanobacteria bacterium UBA12227
Cyanobacteria bacterium UBA8156
Cyanobacteria bacterium UBA8530
Cyanobacteria bacterium UBA8543
Cyanobacteria bacterium UBA8553
Cyanobacteria bacterium UBA8803
Cyanobacteria bacterium UBA9226
Cyanobacteria bacterium UBA9273
Cyanobacteria bacterium UBA9579
Cyanobacteria bacterium UBA9971
Cyanothece sp. UBA12306
Cytophagales bacterium
Deferribacteraceae bacterium
Dehalococcoidia bacterium
Deinococcus radiodurans
Delftia acidovorans
Deltaproteobacteria bacterium
Dermacoccus sp.
Desulfobacter sp.
Desulfobacteraceae bacterium
Desulfobacterales bacterium
Desulfobulbaceae bacterium
Desulfofustis sp.
Desulfomicrobiaceae bacterium
Desulfomicrobium sp.
Desulfonauticus sp.
Desulfosporosinus sp.
Desulfotomaculum sp.
Desulfovibrio piger
Desulfovibrio sp.
Desulfuromonas sp.
Dialister sp.
Dictyoglomus sp.
Dielma fastidiosa
Dietzia sp.
Dorea longicatena
Dysgonomonas sp.
Eggerthellaceae bacterium
Elusimicrobia bacterium
Enterobacter asburiae
Enterobacter sp.
Enterobacteriaceae bacterium
Enterococcus faecalis
Enterococcus sp.
Erwinia persicina
Erwinia sp.
Erwiniaceae bacterium
Erysipelotrichaceae bacterium
Erythrobacter sp.
Escherichia coli
Escherichia sp.
Eubacteriaceae bacterium
Eubacterium sp.
Exiguobacterium sp.
Faecalibacterium sp.
Fervidobacterium sp.
Fibrobacteres bacterium
Firmicutes bacterium
Flavobacteriaceae bacterium
Flavobacteriales bacterium
Flavobacterium sp.
Flexistipes sinusarabici
Franconibacter helveticus
Franconibacter pulveris
Fusobacteria bacterium
Fusobacteriaceae bacterium
Fusobacterium sp.
Gallionella sp.
Gallionellaceae bacterium
Gammaproteobacteria bacterium
Gemmatimonadetes bacterium
Gemmatimonas aurantiaca
Gemmobacter sp.
Geobacter sp.
Geobacter sulfurreducens
Gimesia maris
Glaciecola sp.
Glutamicibacter sp.
Gordonia polyisoprenivorans
Hafnia paralvei
Haliea salexigens
Halieaceae bacterium
Halomonas campaniensis
Halomonas sp.
Helicobacter sp.
Herpetosiphon sp.
Holophagaceae bacterium
Holosporales bacterium
Hydrogenobaculum sp.
Hydrogenophaga sp.
Hyphomicrobiales bacterium
Hyphomonadaceae bacterium
Hyphomonas adhaerens
Hyphomonas atlantica
Hyphomonas sp.
Idiomarina abyssalis
Idiomarina baltica
Idiomarina loihiensis
Idiomarina sp.
Ignavibacteriales bacterium
Janibacter terrae
Janthinobacterium sp.
Jeotgalicoccus sp.
Kandleria vitulina
Klebsiella pneumoniae
Kocuria sp.
Kosmotogaceae bacterium
Ktedonobacter sp.
Lachnoclostridium phytofermentans
Lachnoclostridium sp.
Lachnospiraceae bacterium
Lactobacillus acetotolerans
Lactobacillus johnsonii
Lactobacillus sp.
Lactococcus garvieae
Lactococcus lactis
Lactococcus sp.
Lautropia sp.
Leclercia adecarboxylata
Leclercia sp.
Leeuwenhoekiella sp.
Legionella sp.
Legionellales bacterium
Lentisphaeria bacterium
Leptospiraceae bacterium
Leuconostoc citreum
Leuconostoc lactis
Leuconostoc mesenteroides
Leuconostoc pseudomesenteroides
Limnobacter sp.
Lutibacter sp.
Lysinibacillus sp.
Macrococcus caseolyticus
Maribacter sp.
Marinilabiliaceae bacterium
Marinilabiliales bacterium
Marinobacter adhaerens
Marinobacter hydrocarbonoclasticus
Marinobacter sp.
Maritimibacter sp.
Massilia sp.
Massilia timonae
Megasphaera sp.
Mesotoga infera
Mesotoga sp.
Methyloceanibacter sp.
Methylococcaceae bacterium
Methylophaga sp.
Methylophilaceae bacterium
Methylophilus sp.
Methylotenera mobilis
Microbacteriaceae bacterium
Microbacterium ginsengisoli
Microbacterium sp.
Micrococcaceae bacterium
Micrococcales bacterium
Micrococcus luteus
Microcoleaceae bacterium UBA10368
Microcoleaceae bacterium UBA11344
Microcoleaceae bacterium UBA9251
Micromonosporaceae bacterium
Microscillaceae bacterium
Mitsuokella multacida
Moraxella sp.
Moraxellaceae bacterium
Morganella sp. (in: Bacteria)
Mucilaginibacter sp.
Muricauda sp.
Mycobacterium sp.
Myxococcales bacterium
Neisseriales bacterium
Nitrosomonas nitrosa
Nitrosomonas sp.
Nitrospina sp.
Nitrospinae bacterium
Nitrospira sp.
Nitrospiraceae bacterium
Nocardioides sp.
Nostoc sp. UBA8866
Novosphingobium sp.
Oceanicaulis sp.
Oceanospirillaceae bacterium
Oceanospirillales bacterium
Ochrobactrum sp.
Octadecabacter sp.
Odoribacter splanchnicus
Olsenella sp.
Opitutae bacterium
Oribacterium sp.
Ornithinibacillus sp.
Oscillatoriales bacterium UBA8482
Oscillibacter sp.
Oscillospiraceae bacterium
Oxalobacteraceae bacterium
Paenibacillaceae bacterium
Paenibacillus lactis
Paenibacillus sp.
Pantoea agglomerans
Pantoea ananatis
Pantoea septica
Pantoea sp.
Parabacteroides distasonis
Parabacteroides goldsteinii
Parabacteroides merdae
Parabacteroides sp.
Parachlamydiales bacterium
Paraprevotella xylaniphila
Parasutterella excrementihominis
Parvularcula sp.
Pasteurella multocida
Pasteurellaceae bacterium
Patescibacteria group bacterium
Pediococcus sp.
Pelagibacterium sp.
Pelotomaculum sp.
Peptococcaceae bacterium
Persephonella sp.
Petrotoga sp.
Phascolarctobacterium succinatutens
Phycisphaerales bacterium
Planctomycetaceae bacterium
Planctomycetales bacterium
Planctomycetes bacterium
Planctomycetia bacterium
Planktomarina temperata
Planktothrix sp. UBA10369
Planktothrix sp. UBA8402
Planktothrix sp. UBA8407
Plesiomonas shigelloides
Polaribacter sp.
Polaromonas sp.
Polynucleobacter sp.
Porphyromonadaceae bacterium
Porphyromonas gingivalis
Porticoccaceae bacterium
Prevotella sp.
Prevotella stercorea
Prevotellaceae bacterium
Prolixibacteraceae bacterium
Propionibacteriaceae bacterium
Proteiniclasticum sp.
Proteobacteria bacterium
Proteus sp.
Proteus vulgaris
Providencia sp.
Pseudanabaena sp.
Pseudoalteromonas shioyasakiensis
Pseudoalteromonas sp.
Pseudohongiella sp.
Pseudomonas sp.
Pseudothermotoga sp.
Psychrobacter sp.
Pusillimonas sp.
Raoultella ornithinolytica
Raoultella sp.
Rheinheimera sp.
Rhizobium sp.
Rhodobacter sp.
Rhodobacteraceae bacterium
Rhodobiaceae bacterium
Rhodocyclaceae bacterium
Rhodoferax sp.
Rhodopirellula baltica
Rhodopirellula sp.
Rhodospirillaceae bacterium
Rhodospirillum rubrum
Richelia sp.
Rikenellaceae bacterium
Roseburia sp.
Roseovarius nubinhibens
Roseovarius sp.
Rothia sp.
Ruegeria sp.
Ruminiclostridium sp.
Ruminococcus sp.
Runella sp.
Ruthenibacterium lactatiformans
Salmonella bongori
Saprospirales bacterium
Sarcina sp.
Selenomonas sp.
Serratia grimesii
Serratia liquefaciens
Serratia marcescens
Serratia sp.
Shewanella baltica
Shewanella frigidimarina
Shewanella sp.
Shigella sp.
Smithella sp.
Spartobacteria bacterium
Sphaerochaeta sp.
Sphingobacteriaceae bacterium
Sphingobacterium sp.
Sphingobium sp.
Sphingomonas bacterium
Spirochaeta sp.
Spirochaetaceae bacterium
Spirochaetia bacterium
Spongiibacteraceae bacterium
Sporomusaceae bacterium
Staphylococcus sp.
Stenotrophomonas maltophilia
Stenotrophomonas sp.
Streptococcus salivarius
Streptococcus sp.
Streptomyces sp.
Subdoligranulum sp.
Succinivibrio sp.
Succinivibrionaceae bacterium
Sulfitobacter pontiacus
Sulfitobacter sp.
Sulfobacillus sp.
Sulfuricurvum sp.
Sulfurihydrogenibium sp.
Sutterella sp.
Sutterella wadsworthensis
Sutterellaceae bacterium
Synechococcales bacterium UBA10510
Synechococcales bacterium UBA12195
Synechococcales bacterium UBA8138
Synechococcales bacterium UBA8647
Synechococcus sp. UBA8071
Synechococcus sp. UBA8638
Synechococcus sp. UBA9887
Synergistaceae bacterium
Syntrophaceae bacterium
Syntrophobacteraceae bacterium
Syntrophomonas sp.
Syntrophomonas wolfei
Syntrophorhabdus aromaticivorans
Syntrophus sp. (in: Bacteria)
Tenacibaculum sp.
Terrisporobacter glycolicus
Thalassospira lucentensis
Thalassospira sp.
Thauera sp.
Thermoanaerobacter sp.
Thermodesulfobacterium commune
Thermosipho africanus
Thermotoga naphthophila
Thermotoga neapolitana
Thermotoga sp.
Thermotogae bacterium
Thermovirga lienii
Thermus scotoductus
Thermus sp.
Thiobacillus sp.
Thiomicrospira sp.
Tissierella sp.
Tissierellales bacterium
Tistrella mobilis
Treponema sp.
Trichococcus sp.
Tyzzerella sp.
Vagococcus sp.
Veillonella dispar
Veillonellaceae bacterium
Verrucomicrobia bacterium
Verrucomicrobia subdivision 3 bacterium
Verrucomicrobia subdivision 6 bacterium
Verrucomicrobiales bacterium
Vibrio sp.
Weissella cibaria
Weissella confusa
Wolbachia sp.
Xanthomarina gelatinilytica
Xanthomonadaceae bacterium
Xanthomonadales bacterium
Zetaproteobacteria bacterium
Zunongwangia profunda
Zymomonas mobilis
bacterium
bacterium UBP9_UBA11836
candidate division CPR2 bacterium
candidate division WOR-3
candidate division WOR-3 bacterium
candidate division WWE3 bacterium
candidate division Zixibacteria bacterium
476.5G BioProject
5 SRP152922 SRA736645 fermented potherb mustard brine Raw sequence reads Metagenomics Bacteroides sp.
Chromohalobacter sp.
Halomonas sp.
Lactiplantibacillus pentosus
Lactobacillus sp.
Latilactobacillus sakei
Parasutterella sp.
Pediococcus pentosaceus
Pediococcus sp.
Petrimonas sp.
Psychrobacter sp.
Sphingomonas panni
538.6M BioProject
6 SRP153945 SRA1096720
SRA740488
Mouse microbiota single cell genomes Other Adlercreutzia mucosicola
Agathobaculum desmolans
Alistipes sp. AH-173-L17
Alistipes sp. AH-173-N15
Alistipes sp. AH-173-O09
Alistipes sp. AH-177-A08
Alistipes sp. AH-177-J17
Alistipes sp. AH-177-P20
Alloprevotella tannerae
Anaerococcus prevotii
Anaerotruncus colihominis
Anaerovorax odorimutans
Bacteroides ovatus
Bacteroides sp.
Bacteroides sp. AH-173-B13
Bacteroides sp. AH-173-F14
Bacteroides sp. AH-173-I13
Bacteroides sp. AH-173-I18
Bacteroides sp. AH-173-K19
Bacteroides sp. AH-173-P07
Bacteroides sp. AH-177-B15
Bacteroides sp. AH-177-B16
Bacteroides sp. AH-177-D20
Bacteroides thetaiotaomicron
Bacteroides uniformis
Barnesiella intestinihominis
Barnesiella sp.
Barnesiella sp. AH-173-A03
Barnesiella sp. AH-173-A06
Barnesiella sp. AH-173-A10
Barnesiella sp. AH-173-A15
Barnesiella sp. AH-173-A17
Barnesiella sp. AH-173-A19
Barnesiella sp. AH-173-A20
Barnesiella sp. AH-173-A23
Barnesiella sp. AH-173-B05
Barnesiella sp. AH-173-B06
Barnesiella sp. AH-173-B09
Barnesiella sp. AH-173-B22
Barnesiella sp. AH-173-D09
Barnesiella sp. AH-173-D10
Barnesiella sp. AH-173-D13
Barnesiella sp. AH-173-D14
Barnesiella sp. AH-173-D22
Barnesiella sp. AH-173-E04
Barnesiella sp. AH-173-E09
Barnesiella sp. AH-173-E15
Barnesiella sp. AH-173-E17
Barnesiella sp. AH-173-E18
Barnesiella sp. AH-173-E20
Barnesiella sp. AH-173-F04
Barnesiella sp. AH-173-F06
Barnesiella sp. AH-173-F17
Barnesiella sp. AH-173-F18
Barnesiella sp. AH-173-F23
Barnesiella sp. AH-173-G04
Barnesiella sp. AH-173-G10
Barnesiella sp. AH-173-G11
Barnesiella sp. AH-173-G15
Barnesiella sp. AH-173-G16
Barnesiella sp. AH-173-G18
Barnesiella sp. AH-173-H24
Barnesiella sp. AH-173-I05
Barnesiella sp. AH-173-I08
Barnesiella sp. AH-173-I16
Barnesiella sp. AH-173-I19
Barnesiella sp. AH-173-I20
Barnesiella sp. AH-173-J10
Barnesiella sp. AH-173-J15
Barnesiella sp. AH-173-J16
Barnesiella sp. AH-173-J17
Barnesiella sp. AH-173-K11
Barnesiella sp. AH-173-K21
Barnesiella sp. AH-173-L02
Barnesiella sp. AH-173-L03
Barnesiella sp. AH-173-L20
Barnesiella sp. AH-173-L22
Barnesiella sp. AH-173-L23
Barnesiella sp. AH-173-M11
Barnesiella sp. AH-173-M13
Barnesiella sp. AH-173-M14
Barnesiella sp. AH-173-M19
Barnesiella sp. AH-173-M21
Barnesiella sp. AH-173-N04
Barnesiella sp. AH-173-N05
Barnesiella sp. AH-173-N07
Barnesiella sp. AH-173-N11
Barnesiella sp. AH-173-N16
Barnesiella sp. AH-173-N17
Barnesiella sp. AH-173-N19
Barnesiella sp. AH-173-N23
Barnesiella sp. AH-173-O04
Barnesiella sp. AH-173-O06
Barnesiella sp. AH-173-O07
Barnesiella sp. AH-173-O08
Barnesiella sp. AH-173-O10
Barnesiella sp. AH-173-O15
Barnesiella sp. AH-173-O16
Barnesiella sp. AH-173-O17
Barnesiella sp. AH-173-O19
Barnesiella sp. AH-173-P10
Barnesiella sp. AH-173-P13
Barnesiella sp. AH-173-P14
Barnesiella sp. AH-173-P18
Barnesiella sp. AH-173-P19
Barnesiella sp. AH-177-A14
Barnesiella sp. AH-177-A21
Barnesiella sp. AH-177-B02
Barnesiella sp. AH-177-B21
Barnesiella sp. AH-177-C20
Barnesiella sp. AH-177-E02
Barnesiella sp. AH-177-E21
Barnesiella sp. AH-177-F02
Barnesiella sp. AH-177-F14
Barnesiella sp. AH-177-F19
Barnesiella sp. AH-177-G18
Barnesiella sp. AH-177-G21
Barnesiella sp. AH-177-H12
Barnesiella sp. AH-177-I04
Barnesiella sp. AH-177-K22
Barnesiella sp. AH-177-L10
Barnesiella sp. AH-177-M03
Barnesiella sp. AH-177-M10
Barnesiella sp. AH-177-N10
Barnesiella sp. AH-177-O06
Barnesiella sp. AH-177-O07
Barnesiella sp. AH-177-P05
Barnesiella sp. AH-177-P06
Barnesiella sp. AH-177-P13
Bifidobacterium pseudolongum
Blautia sp.
Blautia wexlerae
Brachyspira hyodysenteriae
Brachyspira sp. AH-173-B14
Brachyspira sp. AH-173-C17
Butyrivibrio sp.
Butyrivibrio sp. AH-177-B09
Butyrivibrio sp. AH-177-G10
Clostridium sp.
Clostridium sp. AH-173-I07
Clostridium sp. AH-173-M15
Clostridium sp. AH-173-N14
Clostridium sp. AH-177-C13
Clostridium sp. AH-177-D07
Clostridium sp. AH-177-D17
Clostridium sp. AH-177-I10
Clostridium sp. AH-177-J23
Clostridium sp. AH-177-K19
Coprococcus sp.
Desulfonispora thiosulfatigenes
Desulfovibrio sp. AH-173-J22
Desulfovibrio sp. AH-177-K13
Dysgonomonas gadei
Eggerthella sp. AH-173-P20
Eggerthella sp. AH-177-I15
Eggerthella sp. AH-177-J18
Eggerthella sp. AH-177-N14
Eubacterium xylanophilum
Fannyhessea vaginae
Helicobacter hepaticus
Holdemanella biformis
Lactobacillaceae bacterium AH-173-B08
Lactobacillaceae bacterium AH-173-D15
Lactobacillaceae bacterium AH-173-E13
Lactobacillaceae bacterium AH-173-E21
Lactobacillaceae bacterium AH-173-F08
Lactobacillaceae bacterium AH-173-I22
Lactobacillaceae bacterium AH-173-J02
Lactobacillaceae bacterium AH-173-M02
Lactobacillaceae bacterium AH-177-A04
Lactobacillaceae bacterium AH-177-A07
Lactobacillaceae bacterium AH-177-E16
Lactobacillaceae bacterium AH-177-F03
Lactobacillaceae bacterium AH-177-I05
Lactobacillaceae bacterium AH-177-J20
Lactobacillaceae bacterium AH-177-K17
Lactobacillaceae bacterium AH-177-L04
Lactobacillaceae bacterium AH-177-L17
Lactobacillaceae bacterium AH-177-M22
Lactobacillaceae bacterium AH-177-O20
Lactobacillaceae bacterium AH-177-P21
Ligilactobacillus animalis
Neorickettsia risticii
Neorickettsia sp.
Neorickettsia sp. AH-177-C17
Odoribacter splanchnicus
Oscillibacter valericigenes
Parabacteroides distasonis
Parabacteroides merdae
Parasutterella excrementihominis
Peptostreptococcaceae bacterium
Phocaeicola dorei
Phocaeicola vulgatus
Porphyromonas gingivalis
Porphyromonas sp.
Porphyromonas sp. AH-173-A18
Porphyromonas sp. AH-173-E08
Porphyromonas sp. AH-173-G21
Porphyromonas sp. AH-173-K14
Prevotella buccae
Prevotella maculosa
Prevotella oryzae
Prevotella sp. AH-173-A05
Prevotella sp. AH-173-A22
Prevotella sp. AH-173-B04
Prevotella sp. AH-173-B11
Prevotella sp. AH-173-B15
Prevotella sp. AH-173-B17
Prevotella sp. AH-173-B18
Prevotella sp. AH-173-B19
Prevotella sp. AH-173-C03
Prevotella sp. AH-173-C04
Prevotella sp. AH-173-C07
Prevotella sp. AH-173-C09
Prevotella sp. AH-173-C10
Prevotella sp. AH-173-C14
Prevotella sp. AH-173-C22
Prevotella sp. AH-173-C23
Prevotella sp. AH-173-D03
Prevotella sp. AH-173-D04
Prevotella sp. AH-173-D17
Prevotella sp. AH-173-D21
Prevotella sp. AH-173-E02
Prevotella sp. AH-173-E05
Prevotella sp. AH-173-E07
Prevotella sp. AH-173-E11
Prevotella sp. AH-173-F10
Prevotella sp. AH-173-F15
Prevotella sp. AH-173-F21
Prevotella sp. AH-173-F22
Prevotella sp. AH-173-G07
Prevotella sp. AH-173-G09
Prevotella sp. AH-173-G19
Prevotella sp. AH-173-I21
Prevotella sp. AH-173-I23
Prevotella sp. AH-173-J11
Prevotella sp. AH-173-J20
Prevotella sp. AH-173-K03
Prevotella sp. AH-173-K07
Prevotella sp. AH-173-K08
Prevotella sp. AH-173-K09
Prevotella sp. AH-173-K15
Prevotella sp. AH-173-K17
Prevotella sp. AH-173-K18
Prevotella sp. AH-173-L06
Prevotella sp. AH-173-L08
Prevotella sp. AH-173-L10
Prevotella sp. AH-173-L11
Prevotella sp. AH-173-L14
Prevotella sp. AH-173-L16
Prevotella sp. AH-173-M03
Prevotella sp. AH-173-M04
Prevotella sp. AH-173-M09
Prevotella sp. AH-173-M17
Prevotella sp. AH-173-M20
Prevotella sp. AH-173-M22
Prevotella sp. AH-173-M23
Prevotella sp. AH-173-N02
Prevotella sp. AH-173-N06
Prevotella sp. AH-173-N08
Prevotella sp. AH-173-N21
Prevotella sp. AH-173-N22
Prevotella sp. AH-173-O05
Prevotella sp. AH-173-O13
Prevotella sp. AH-173-O14
Prevotella sp. AH-173-O18
Prevotella sp. AH-173-O22
Prevotella sp. AH-173-P15
Prevotella sp. AH-177-A01
Prevotella sp. AH-177-A10
Prevotella sp. AH-177-A13
Prevotella sp. AH-177-A20
Prevotella sp. AH-177-B04
Prevotella sp. AH-177-B08
Prevotella sp. AH-177-B20
Prevotella sp. AH-177-B23
Prevotella sp. AH-177-C02
Prevotella sp. AH-177-C07
Prevotella sp. AH-177-D13
Prevotella sp. AH-177-D22
Prevotella sp. AH-177-E17
Prevotella sp. AH-177-E18
Prevotella sp. AH-177-E22
Prevotella sp. AH-177-E23
Prevotella sp. AH-177-F10
Prevotella sp. AH-177-F17
Prevotella sp. AH-177-F21
Prevotella sp. AH-177-G09
Prevotella sp. AH-177-H24
Prevotella sp. AH-177-I02
Prevotella sp. AH-177-I07
Prevotella sp. AH-177-I18
Prevotella sp. AH-177-K08
Prevotella sp. AH-177-K23
Prevotella sp. AH-177-N05
Prevotella sp. AH-177-N08
Prevotella sp. AH-177-N11
Prevotella sp. AH-177-N16
Prevotella sp. AH-177-P19
Prevotella sp. AH-177-P22
Prevotella stercorea
Proteiniphilum acetatigenes
Rikenella microfusus
Roseburia hominis
Roseburia sp.
Ruminococcus sp.
Ruminococcus sp. AH-177-L08
Solobacterium sp. AH-177-J19
Sutterella sp. AH-173-D08
Sutterella sp. AH-173-P11
Sutterella sp. AH-177-A23
Sutterella sp. AH-177-C11
Sutterella sp. AH-177-D19
Sutterella sp. AH-177-F18
Sutterella sp. AH-177-K06
Sutterella sp. AH-177-M04
Sutterella sp. AH-177-N06
Sutterella sp. AH-177-N07
Tannerella forsythia
Ureaplasma sp. AH-173-J06
Ureaplasma sp. AH-177-D21
[Clostridium] leptum
[Clostridium] scindens
[Clostridium] symbiosum
bacterium
311.4G BioProject
7 SRP154410 SRA742399
SRA767011
Metagenome-assembled genomes from hydrothermal vent and freshwater spring sediments Metagenomics Acidicaldus sp.
Acidiferrobacteraceae bacterium
Acidilobales archaeon
Acidimicrobiales bacterium
Acidithiobacillus sp.
Acidobacteria bacterium
Acidobacteriales bacterium
Acidobacterium capsulatum
Aciduliprofundum boonei
Aciduliprofundum sp.
Actinobacteria bacterium
Aeromonadales bacterium
Aeropyrum sp.
Agrobacterium albertimagni
Aliiroseovarius sp.
Alphaproteobacteria bacterium
Ammonifex degensii
Anabaena sp.
Anaerolinea sp.
Anaerolinea thermolimosa
Anaerolineae bacterium
Aquifex aeolicus
Archaeoglobus fulgidus
Archaeoglobus sp.
Archaeoglobus veneficus
Arcobacter sp.
Armatimonadetes bacterium
Aurantimonas coralicida
Bacillaceae bacterium
Bacteroidaceae bacterium
Bacteroidales bacterium
Bacteroides sp.
Bacteroidetes bacterium
Bacteroidia bacterium
Beggiatoa sp.
Bellilinea caldifistulae
Betaproteobacteria bacterium
Blastocatellia bacterium
Bryobacteraceae bacterium
Bryobacterales bacterium
Burkholderiales bacterium
Caldicellulosiruptor owensensis
Caldilinea aerophila
Caldimicrobium sp.
Caldimicrobium thiodismutans
Caldisericum exile
Caldithrix abyssi
Caldithrix sp.
Calditrichae bacterium
Caldivirga sp.
Campylobacteraceae bacterium
Campylobacterales bacterium
Candidatus Acetothermia bacterium
Candidatus Aenigmarchaeota archaeon
Candidatus Aerophobetes bacterium
Candidatus Altiarchaeales archaeon
Candidatus Amesbacteria bacterium
Candidatus Aminicenantes bacterium
Candidatus Atribacteria bacterium
Candidatus Bathyarchaeota archaeon
Candidatus Beckwithbacteria bacterium
Candidatus Berkelbacteria bacterium
Candidatus Buchananbacteria bacterium
Candidatus Caldarchaeum subterraneum
Candidatus Caldatribacterium californiense
Candidatus Caldatribacterium saccharofermentans
Candidatus Caldatribacterium sp.
Candidatus Calescamantes bacterium
Candidatus Campbellbacteria bacterium
Candidatus Cloacimonetes bacterium
Candidatus Coatesbacteria bacterium
Candidatus Dadabacteria bacterium
Candidatus Dependentiae bacterium
Candidatus Desantisbacteria bacterium
Candidatus Desulfofervidus auxilii
Candidatus Doudnabacteria bacterium
Candidatus Eisenbacteria bacterium
Candidatus Fraserbacteria bacterium
Candidatus Gottesmanbacteria bacterium
Candidatus Gracilibacteria bacterium
Candidatus Hydrogenedentes bacterium
Candidatus Jorgensenbacteria bacterium
Candidatus Kaiserbacteria bacterium
Candidatus Korarchaeota archaeon
Candidatus Kryptonia bacterium
Candidatus Kryptonium thompsoni
Candidatus Margulisbacteria bacterium
Candidatus Marinimicrobia bacterium
Candidatus Methanomethylia archaeon
Candidatus Methanomethyliaceae archaeon
Candidatus Methanomethylicus mesodigestum
Candidatus Methanomethylicus sp.
Candidatus Methanoperedenaceae archaeon
Candidatus Methanosuratus petracarbonis
Candidatus Micrarchaeota archaeon
Candidatus Micrarchaeum sp.
Candidatus Moranbacteria bacterium
Candidatus Nanopusillus sp.
Candidatus Nealsonbacteria bacterium
Candidatus Omnitrophica bacterium
Candidatus Pacearchaeota archaeon
Candidatus Parcubacteria bacterium
Candidatus Peregrinibacteria bacterium
Candidatus Poribacteria bacterium
Candidatus Portnoybacteria bacterium
Candidatus Roizmanbacteria bacterium
Candidatus Rokubacteria bacterium
Candidatus Saccharibacteria bacterium
Candidatus Scalindua sp.
Candidatus Solibacter sp.
Candidatus Staskawiczbacteria bacterium
Candidatus Syntrophoarchaeum butanivorans
Candidatus Taylorbacteria bacterium
Candidatus Tenderia electrophaga
Candidatus Tenderia sp.
Candidatus Thermokryptus mobilis
Candidatus Thorarchaeota archaeon
Candidatus Uhrbacteria bacterium
Candidatus Vogelbacteria bacterium
Candidatus Wildermuthbacteria bacterium
Candidatus Wirthbacteria bacterium
Candidatus Woesearchaeota archaeon
Candidatus Woesebacteria bacterium
Candidatus Wolfebacteria bacterium
Candidatus Yonathbacteria bacterium
Caulobacter sp.
Caulobacterales bacterium
Chitinophagaceae bacterium
Chlamydiae bacterium
Chlorobaculum parvum
Chlorobi bacterium
Chloroflexi bacterium
Chloroflexus sp.
Chromatiaceae bacterium
Chromatiales bacterium
Chthoniobacterales bacterium
Chthonomonadales bacterium
Chthonomonadetes bacterium
Chthonomonas sp.
Clostridia bacterium
Crenarchaeota archaeon
Crenotrichaceae bacterium
Cytophaga hutchinsonii
Dehalococcoidia bacterium
Deltaproteobacteria bacterium
Desulfacinum infernum
Desulfatirhabdium butyrativorans
Desulfobacca acetoxidans
Desulfobacteraceae bacterium
Desulfobacterales bacterium
Desulfobulbaceae bacterium
Desulfobulbus sp.
Desulfomonile tiedjei
Desulfonatronum sp.
Desulfovibrio putealis
Desulfurella acetivorans
Desulfurivibrio alkaliphilus
Desulfurococcaceae archaeon
Desulfuromonadaceae bacterium
Desulfuromonas soudanensis
Devosia sp.
Dictyoglomus thermophilum
Dictyoglomus turgidum
Dissulfuribacter thermophilus
Ectothiorhodospiraceae bacterium
Elusimicrobia bacterium
Epsilonproteobacteria bacterium
Euryarchaeota archaeon
Fervidicoccus fontis
Fervidobacterium nodosum
Fervidobacterium pennivorans
Fervidobacterium thailandense
Firmicutes bacterium
Fischerella sp.
Flammeovirgaceae bacterium
Flavobacteriales bacterium
Flavobacteriia bacterium
Gallionellaceae bacterium
Gammaproteobacteria bacterium
Gemmata sp.
Gemmataceae bacterium
Gemmatimonadetes bacterium
Geoalkalibacter subterraneus
Geobacter metallireducens
Geobacter sp.
Geobacteraceae bacterium
Geoglobus ahangari
Gloeobacter violaceus SpSt-379
Hadesarchaea archaeon
Halieaceae bacterium
Halomonas sp.
Halothiobacillaceae bacterium
Halothiobacillus sp.
Helicobacteraceae bacterium
Hellea balneolensis
Hydrogenobacter sp.
Hydrogenobaculum sp.
Hydrotalea flava
Hyphomicrobiales bacterium
Ignavibacteria bacterium
Ignavibacteriales bacterium
Ignavibacterium album
Ignisphaera aggregans
Ignisphaera sp.
Kiritimatiellae bacterium
Kosmotoga arenicorallina
Ktedonobacter sp.
Leeuwenhoekiella sp.
Lentisphaerae bacterium
Leptospiraceae bacterium
Leptospirillum ferriphilum
Leucothrix mucor
Lutibacter sp.
Maribacter sp.
Mariniphaga anaerophila
Marinobacter antarcticus
Marinobacter sp.
Meiothermus ruber
Mesoaciditoga lauensis
Mesotoga infera
Methanobacteriaceae archaeon
Methanoculleus sp.
Methanofollis liminatans
Methanolinea sp.
Methanomicrobia archaeon
Methanosarcinales archaeon
Methylophaga aminisulfidivorans
Methylophaga sp.
Methylothermaceae bacterium
Mizugakiibacter sp.
Moorella mulderi
Nannocystis exedens
Nitratifractor salsuginis
Nitratifractor sp.
Nitrosomonadales bacterium
Nitrosopumilus sp.
Nitrososphaerales archaeon
Nitrososphaeria archaeon
Nitrospirae bacterium
Oceanithermus profundus
Oceanithermus sp.
Oceanospirillales bacterium
Oscillatoriales cyanobacterium SpSt-402
Oscillatoriales cyanobacterium SpSt-418
Paenibacillaceae bacterium
Persephonella sp.
Phaeodactylibacter sp.
Phycisphaeraceae bacterium
Phycisphaerae bacterium
Phycisphaerales bacterium
Planctomycetaceae bacterium
Planctomycetales bacterium
Planctomycetes bacterium
Planktothricoides sp. SpSt-374
Polyangiaceae bacterium
Porticoccus sp.
Pricia antarctica
Pricia sp.
Prosthecochloris aestuarii
Proteobacteria bacterium
Pseudoalteromonas prydzensis
Pseudoalteromonas sp.
Pseudohongiella sp.
Pseudomonas graminis
Pseudomonas sabulinigri
Pseudomonas xinjiangensis
Pseudothermotoga hypogea
Pyrobaculum sp.
Rhodobacteraceae bacterium
Rhodobacterales bacterium
Rhodocyclaceae bacterium
Rhodospirillales bacterium
Rhodothermus marinus
Rhodovulum sp.
Roseobacter sp.
Salinimicrobium catena
Saprospiraceae bacterium
Schlesneria paludicola
Sedimenticola sp.
Sedimenticola thiotaurini
Sediminispirochaeta sp.
Smithella sp.
Sorangium sp.
Spartobacteria bacterium
Sphingomonadales bacterium
Sphingomonas sp.
Spirochaetales bacterium
Spirochaetes bacterium
Spirochaetia bacterium
Sporocytophaga sp.
Staphylothermus marinus
Sulfitobacter litoralis
Sulfolobales archaeon
Sulfuricurvum sp.
Sulfurihydrogenibium azorense
Sulfurimonas autotrophica
Synechococcus sp.
Synergistales bacterium
Synergistetes bacterium
Syntrophobacter sp.
Syntrophobacterales bacterium
Thermoanaerobaculum aquaticum
Thermococcus litoralis
Thermococcus sp.
Thermocrinis ruber
Thermocrinis sp.
Thermodesulfatator atlanticus
Thermodesulfatator sp.
Thermodesulfobacterium geofontis
Thermodesulfobium narugense
Thermodesulforhabdus norvegica
Thermodesulfovibrio aggregans
Thermofilaceae archaeon
Thermofilum adornatum
Thermofilum pendens
Thermofilum sp.
Thermogladius calderae
Thermoleophilum album
Thermomicrobium roseum
Thermopetrobacter sp.
Thermoplasmata archaeon
Thermoplasmatales archaeon
Thermoproteales archaeon
Thermoprotei archaeon
Thermoproteus sp.
Thermorudis peleae
Thermorudis sp.
Thermosphaera aggregans
Thermosulfidibacter takaii
Thermosulfurimonas dismutans
Thermotoga sp.
Thermotogaceae bacterium
Thermotogales bacterium
Thermus antranikianii
Thermus caliditerrae
Thermus islandicus
Thermus sp.
Thermus tengchongensis
Thioalkalivibrio sp.
Thiolapillus brandeum
Thiomicrospira sp.
Thioploca sp.
Thiothrix sp.
Thiotrichales bacterium
Treponema caldarium
Treponema sp.
Trueperaceae bacterium
Verrucomicrobia bacterium
Verrucomicrobia subdivision 3 bacterium
Verrucomicrobiales bacterium
Vulcanisaeta sp.
archaeon
bacterium
candidate division CPR3 bacterium
candidate division NC10 bacterium
candidate division WOR-3 bacterium
candidate division WWE3 bacterium
candidate division Zixibacteria bacterium
198.3G BioProject
8 SRP199402 SRA890009 Oral Microbiome of newborns Other Alistipes sp.
Bacteroides sp.
Bifidobacterium sp.
Collinsella sp.
Corynebacterium sp.
Deinococcus sp.
Desulfobulbus sp.
Desulfovibrio sp.
Dialister sp.
Dysgonomonas sp.
Escherichia sp.
Faecalibacterium sp.
Fusobacterium sp.
Gardnerella sp.
Haemophilus sp.
Klebsiella sp.
Lactobacillus sp.
Paracoccus sp.
Parasutterella sp.
Petrimonas sp.
Prevotella sp.
Propionibacterium sp.
Propionispira sp.
Proteiniphilum sp.
Roseburia sp.
Shigella sp.
Staphylococcus sp.
Thiopseudomonas sp.
Ureaplasma sp.
Veillonella sp.
999.6M BioProject
9 SRP238287 SRA1014591 The combination of oligofructose and metformin alters the gut microbiota and improves metabolic profiles in diet-induced obese animals Other Alistipes sp.
Anaerostipes sp.
Bacteroides sp.
Bifidobacterium sp.
Bilophila sp.
Blautia sp.
Collinsella sp.
Dialister sp.
Dorea sp.
Enterococcus sp.
Erysipelotrichaceae bacterium
Escherichia sp.
Eubacterium sp.
Faecalibacterium sp.
Flavonifractor sp.
Fusobacterium sp.
Holdemanella sp.
Intestinibacter sp.
Lachnoclostridium sp.
Lachnospira sp.
Lactobacillus sp.
Megamonas sp.
Megasphaera sp.
Olsenella sp.
Oscillospiraceae bacterium
Parabacteroides sp.
Paraprevotella sp.
Parasutterella sp.
Phascolarctobacterium sp.
Prevotella sp.
Prevotellaceae bacterium
Romboutsia sp.
Ruminococcus sp.
Streptococcus sp.
Subdoligranulum sp.
Succinivibrio sp.
Sutterella sp.
uncultured Fusicatenibacter sp.
1.3G BioProject
10 SRP297772 SRA1170678 gut microbiota Metagenome Other Akkermansia sp.
Bacteroides sp.
Bifidobacterium sp.
Coprococcus sp.
Eubacterium sp.
Faecalibacterium sp.
394.7M BioProject
11 SRP322437 SRA1239999 Bacteroides sp. Raw sequence reads Whole Genome Sequencing Bacteroides sp. BioProject