The items with * are required.
The items with ** are conditionally required.
Contact information of submitter(s). Questions and notifications about a submission are contacted to the e-mail address(es) listed here. Personal contact information is considered confidential and is collected to be used by DDBJ BioProject staff should questions arise; the general information about the research center is used for public display.
- First name
- Submitter's first name.
- Last name*
- Submitter's last name.
- E-mail address. Enter an address from the organizations domain.
Organization to which a contact person belongs.
- Submitting organization*
- full name of organization.
- Submitting organization URL
- The URL of submitter's organization.
Select "Hold" or "Release". You cannot specify hold date. Please see Release of projects for detailed release mechanism.
- Released concurrently when the DDBJ, DRA, DTA and DOR record(s) citing this ID is released.
- Release project data immediately. Private DDBJ record(s) citing this ID is not released.
An informative paragraph that describes the project and provides informative context for the displayed project record.
- Project title*
- Very short descriptive name of the project for caption, labels, etc for public display. For example: Chromosome Y sequencing, Global studies of microbial diversity on human skin.
- Description (a paragraph) of the project goals and purposes. Provide enough information (more than 100 characters) in the description for other users to interpret the data.
- Private comments to DDBJ staff
- Use this field if you have questions for database support staff. The content is not made public. If you intend to submit an umbrella project, please inform us that "this is umbrella project".
- Select the primary general relevance of the study.
Relevance Description Agricultural Medical Industrial Could include bio-remediation, bio-fuels and other areas of research where there are areas of mass production. Environmental Evolution ModelOrganism Other Unspecified major impact categories to be defined in the "Relevance description".
- Relevance description*
- Describe the relevance when the Other is selected.
If you are registering a project that is part of an initiative which is already registered in the BioProject database, then please tell us the existing BioProject accession number and provide a general description of the larger initiative. This information is needed for project linking.
- Initiative description*
- Description of an initiative.
- Umbrella BioProject accession*
- A BioProject accession number of an initiative which is already registered in the BioProject database.
An URL may be provided, with a label for the resource, to reference a resource that is directly relevant to the submitted project.
- URL of web site that is related to this study.
Funding information for a project.
- Name of funding agency. For example: Japan Society for the Promotion of Science.
- Agency abbreviation
- Abbreviation of funding agency. For example: JSPS.
- Grant ID
- Grant number is collected to support searches (e.g., publications often cite Grant numbers). For example: JSPS KAKENHI Grant Number 12345678.
- Grant title
- Grant title may also support searches.
- Consortium name
- If study is carried out as part of a consortium, provide the consortium name.
- Consortium URL
- If the consortium maintains a web site, provide the URL.
Project data type
- Project data type*
A general label indicating the primary study goal. Select appropriate types. News: A BioProject record can have multiple project data types
Project Data type Description Genome Sequencing whole, or partial, genome sequencing project (with or without a genome assembly) Clone Ends clone-end sequencing project Epigenomics DNA methylation, histone modification, chromatin accessibility datasets Exome exome resequencing project Map project that results in non-sequence map data such as genetic map, radiation hybrid map, cytogenetic map, optical map, and etc. Metagenome sequence analysis of environmental samples Phenotype and Genotype project correlating phenotype and genotype Proteome large scale proteomics experiment including mass spec. analysis Random Survey sequence generated from a random sampling of the collected sample; not intended to be comprehensive sampling of the material. Targeted Locus (Loci) project to sequence specific loci, such as a 16S rRNA sequencing Transcriptome or Gene Expression large scale RNA sequencing or expression analysis. Includes cDNA, EST, RNA_seq, and microarray. Variation project with a primary goal of identifying large or small sequence variation across populations. Other a free text description is provided to indicate Other data type
- Project data type description*
- Describe the project data type when the Other is selected.
- Sample scope*
- The scope and purity of the biological sample used for the study.
Sample scope Description Monoisolate A single animal, cultured cell-line, inbred population (or possibly a heterogeneous population when a single genome assembly is generated from the pooled sample; not preferred). Multiisolate Multiple individuals, a population (representation of a species). Multi-species Sample represents multiple species. Environment Species content of the sample is not known. Synthetic Sample is synthetically created by a machine. Other Specify the sample scope that was used in the "Target description".
- The type of material that is isolated from the sample for use in the experimental study.
Material Description Genome A whole genome initiative. May be only the nuclear genome. Use for DNA of a metagenome sample. Partial Genome One or more chromosomes or replicons were experimentally purified. Transcriptome Transcript data. Reagent Material studied was obtained by chemical reaction, precipitation. Proteome Protein or peptide data. Phenotype Phenotypic descriptive data. Other Specify the material that was used in the "Target description".
- The scale, or type, of information that the study is designed to generate from the sample material.
Capture Description Whole The project makes use of the whole sample material (most common case). Clone Ends Capturing clone end data. Exome Capturing exon-specific data. Targeted Locus/Loci Capturing specific loci (gene, genomic region, barcode standard). Random Survey Not using whole sample, an incomplete survey of the sample. Other Specify the scale or type of the captured material in the "Target description".
- Target description*
- Describe the Sample scope/Material/Capture when the Other(s) is selected.
- The core experimental approach used to obtain the data that is submitted to archival databases.
Methodology Description Sequencing Sequencing using Sanger, 454, Illumina, etc wit Array Data/Sequence are generated by hybridization arrays. Mass Spectroscopy Data are generated by mass spectroscopy. Other Please provide data description in the "Methodogy description".
- Methodology description*
- Describe the methodology type when the Other is selected.
Project goals with respect to the type of data that will be generated and submitted to an INSDC-associated database. Select all relevant menu options.
- Project goals with respect to the type of data that will be generated and submitted to an INSDC-associated database. Select all relevant menu options.
Objective Description Raw Sequence Reads Submission of raw sequencing information as it comes out of machine. Sequence Sequence which is not raw - meaning processed (clipped, matepaired, oriented). Analysis Higher level interpretation of the data. Assembly Experiment will result in assemblies (genome or transcriptome). Annotation Experiment wil result in Annotation. Variation Submission of variations. Epigenetic Markers Experiment will result in Epigenetic markers. Expression Submission of gene expression. Maps Experiment will result in cytogenetic, physical, Rh, etc...maps. Phenotype Experiment will deliver phenotypes. Other
Locus tag prefix
- Locus tag prefix*
- Locus tag prefix generation box will appear when [Project data type="Genome Sequencing" or "Metagenome"] AND [Capture="Whole"] AND [Objective="Sequence" or "Annotation" or "Assembly"].
Registration of a unique locus tag prefix is required for studies that result in genome assemblies. Please leave the prefix box empty, when a prefix is not necessary for WGS only submission.
Locus tag prefix format
The locus_tag prefix can contain only alpha-numeric characters and it must be 3-12 characters long. It should start with a letter, but numerals can be in the 2nd position or later in the string. (ex. A1C). There should be no symbols, such as -_* in the prefix. The locus_tag prefix is to be separated from the tag value by an underscore ‘_’, eg A1C_00001.
Taxonomy and description of target organism.
- Organism name*
In the project spanning multiple species, enter a taxonomic classification common to the species (e.g., genus name).
- Strain, breed, cultivar
- Microbial strain name, or eukaryotic breed or cultivar name. Please provide this or "Isolate name or label"
- Isolate name or label
- A label for an isolated sample, or name of an individual animal (e.g., Clint). Please provide this or "Strain, breed, cultivar".
- A brief description, to elaborate upon the brief label.
- Description of novel organism
- Enter necessary information to register an organism to the taxonomy database.
Environmental sample information
This section appears instead of the Organism information when the Sample scope="Environment" in the Target.
- Environmental sample name*
- Unclassified sequences including metagenome and environmental samples may be found at here. If an appropriate name was not found, describe a novel name you propose and details of sample information in the Environmental sample description.
- Environmental sample description
- Describe details of sample information.
General properties of target organism.
- Select a cellularity.
Cellularity Unicellular Multicellular Colonial
- Select a Reproduction.
Reproduction Sexual Asexual
- Haploid genome size
- Haploid genome size in Kb, Mb or cM.
- Select a Ploidy.
Ploidy Haploid Diploid Polyploid Allopolyploid
Describe how many replicons this organism has, how they are named (e.g., 1, 2, 3 vs. I, II, III), the replicon type (chromosome etc.), and the subcellular structure that the replicon is located in.
- The preferred standard for the replicon name.
- Select a replicon type.
Replicon type Chromosome Plasmid Linkage Group Segment Other
- The replicon subcellular location. For instance, the nucleus, or a differentiated organella. Please select "Nuclear or Prokaryote" for the chromosomes of eularyotes, bacteria or archaea.
Location Nuclear or Prokaryote Macronuclear Nucleomorph Mitochondrion Kinetoplast Chloroplast Chromoplast Plastid Virion or Phage Proviral or Prophage Viroid Extrachrom Cyanelle Apicoplast Leucoplast Proplastid Hydrogenosome Chromatophore Other
- The size and unit of measurement for the estimated genome size.
- A description of any unusual features of the replicon.
Phenotype of target organism.
- Enter a disease name.
- Biotic Relationship
- Select a BioticRelationship.
BioticRelationship FreeLiving Commensal Symbiont Episymbiont Intracellular Parasite Host Endosymbiont
- Trophic Level
- Select a TrophicLevel.
TrophicLevel Autotroph Heterotroph Mixotroph
When the target organism is prokaryote, please describe the general morphology if known.
- Select all relevant menu options.
Shape Description Bacilli rod-shaped Cocci spherical-shaped Spirilla spiral-shaped Coccobacilli elongated coccal form Filamentous filament-shaped (bacilli thar occur in long threads) Vibrios vibrio-shaped (short, slightly curved rods) Fusobacteria fusiform or spindle-shaped (rods with tapered ends) SquareShaped CurvedShaped Tailed
- Choose gram positive or negative.
Gram Positive Negative
- Choose a Motility.
Motility Yes No
- Choose enveloped or not.
Enveloped Yes No
- Choose target bacteria forms endospores or not.
Endospores Yes No
The general habitat for any organism. Please indicate additional extremophile parameters if known.
- Choose a Habitat.
Habitat HostAssociated Aquatic Terrestrial Specialized Multiple Unknown
- Choose a Salinity.
Salinity NonHalophilic Mesophilic ModerateHalophilic ExtremeHalophilic Unknown
- Oxygen requirement
- Choose an Oxygen requirement.
OxygenReq Aerobic Microaerophilic Facultative Anaerobic Unknown
- Temperature range
- Choose a temperature range.
TemperatureRange Cryophilic Psychrophilic Mesophilic Thermophilic Hyperthermophilic Unknown
- Optimum Temperature
- Optimum temperature in Celsius.
- PubMed ID
- The PubMed ID(s) will be used to populate the publication information.
<Publication id="15557739"> <DbType>ePubmed</DbType> </Publication> <ProjectReleaseDate> ...
- Provide a DOI if a PubMed ID is not available. Provide the additional reference information.
<Publication id="10.1093/nar/gku1120"> <DbType>eDOI</DbType> </Publication> <ProjectReleaseDate> ...
- Reference title*
- A title of reference.
- Journal title*
- A title of journal.
- Publication year.
- Journal volume.
- Journal issue.
- Pages from*
- Reference start page.
- Pages to*
- Reference end page.
- First name*
- First name of author.
- Middle initial.
- Last name*
- Last name of author.
- Suffix for author.