Title | RICE PLANT ARCHITECTURE DOMESTICATION locus sequencing and assembly |
Study Type | Other |
Abstract | Improving the yield by modifying plant architecture is key to progressive crop domestication. Here, we show that a 110-kb deletion on the short arm of chromosome 7 promotes the critical transition from semi-prostrate growth and low yield in wild rice (Oryza rufipogon), to erect growth and high yield .. [more] in Asian cultivated rice (O. sativa). The microdeletion harbors a tandem repeat of seven putative Cys2-His2 zinc-finger genes. Three of these genes regulate the plant architecture in O. rufipogon and are closely linked to the previously identified PROSTRATE GROWTH 1 (PROG1) gene. Therefore, we refer to this locus as RICE PLANT ARCHITECTURE DOMESTICATION (RPAD). Furthermore, a similar but independent 113-kb deletion was detected at the RPAD locus in African cultivated rice. These results indicate that the deletions, coupled with the loss of a tandem repeat of zinc-finger genes, drove the parallel domestication of plant architecture in Asian and African rice. [less] |
Description | |
Center Name | BioProject |
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Submission | SRA1046382 |
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SRA1047465 |
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SRA721638 |
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Experiment | SRX4215142 |
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SRX4215143 |
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SRX4215144 |
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SRX4215145 |
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SRX7779977 |
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SRX7779978 |
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SRX7779979 |
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SRX7793836 |
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SRX7793837 |
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SRX7793838 |
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Sample | SRS3417421 | ||
SRS3417422 | ||||
SRS3417423 | ||||
SRS3417424 | ||||
SRS6209234 |