# | STUDY | SUBMISSION | STUDY_TITLE | STUDY_TYPE | ORGANISM | BASES | SUBMITTED | CENTER_NAME |
---|---|---|---|---|---|---|---|---|
1 | DRP000881 | DRA000850 | Alteration of the Structure of Humic Acids by Bacteria from the Deep Subsurface Miocene and Pliocene Formations in Northernmost Japan. | Metagenomics | groundwater metagenome | 160.6K | 2012-10-31 | H-RISE |
2 | DRP002335 | DRA002286 | Subsurface bacterial community of Musashino Upland | Other |
compost metagenome groundwater metagenome sediment metagenome |
26.6M | 2014-04-04 | SAITAMA |
3 | DRP002887 |
DRA004443 DRA005244 |
Methane production mechanisms in deep subterrestrial environment in Southeastern Kyushu | Other | groundwater metagenome | 472.4M | 2016-11-08 | SHIZUOKA |
4 | DRP003108 | DRA004556 | Regional variation of CH4 and N2 production processes in the deep aquifers of an accretionary prism | Other | groundwater metagenome | 416.6M | 2016-03-14 | SHIZUOKA |
5 | DRP003137 | DRA003557 | Metabolically Active Bacteria of Nitrospirae Phylum Dominant in Deep Terrestrial Crust | Other | groundwater metagenome | 789.1K | 2015-05-14 | FISHRA |
6 | DRP003329 | DRA005250 | Microbial methane production in the deep aquifer of accretionary prism in Okinawa Island | Other | groundwater metagenome | 383.2M | 2016-11-10 | SHIZUOKA |
7 | DRP003663 | DRA005422 | Microbial community of various water sources in Kathmandu Valley | Other |
freshwater metagenome groundwater metagenome riverine metagenome |
955.8M | 2017-01-05 | YAMANASHI |
8 | DRP003706 | DRA005823 | Metagenome of The Cedars serpentinizing springs | Other | groundwater metagenome | 24.1G | 2017-05-26 | JAMSTEC |
9 | DRP004002 |
DRA004963 DRA005131 |
16S rRNA gene and metagenomic sequencing analysis of a deep granitic aquifer | Other | groundwater metagenome | 50.8M | 2016-09-23 | UT_SCI |
10 | DRP004079 | DRA006583 | Multi-omics analysis of bioaugmentation process with Rhodococcus jostii RHA1 in chloroethene-contaminated groundwater | Other | groundwater metagenome | 41.2G | 2018-02-15 | NITE |
11 | DRP004523 | DRA006433 | Microbial community of various types of water sources in Kathmandu Valley | Other |
groundwater metagenome riverine metagenome |
785.3M | 2018-01-22 | YAMANASHI |
12 | DRP005349 | DRA006057 | Microbial community analysis in the terrestrial subsurface lignite seam of the Tempoku coalfield, Hokkaido, Japan. | Other | groundwater metagenome | 2.5G | 2017-08-09 | H-RISE |
13 | DRP005767 |
DRA009534 DRA009535 DRA009536 |
Development of hydrogen gas (H2) producing system using H2-producing fermentative bacteria contained in deep groundwater | Other | groundwater metagenome | 374.4M | 2020-01-23 | SHIZUOKA |
14 | DRP005947 |
DRA006658 DRA006659 |
Microbial rapid denitrification system in Kathmandu, Nepal | Other | groundwater metagenome | 125.2M | 2018-03-20 | YAMANASHI |
15 | DRP006061 | DRA010105 | Chloroethenes-dechlorinating consortium using gluconate as a hydrogen donor | Other | groundwater metagenome | 71.4M | 2020-04-22 | OSAKA_ENG |
16 | ERP011345 | ERA463459 | Retrieval of Commamox genomes using metagenomics | Other |
groundwater metagenome nitrifying bacterium enrichment culture wastewater metagenome |
103.8G | AALBORG UNIVERSITY | |
17 | ERP016392 |
ERA673813 ERA673820 |
Beach sand microbiome from Calvert Island Canada | Other |
beach sand metagenome groundwater metagenome seawater metagenome |
4.7G | University of California San Diego Microbiome Initiative | |
18 | ERP017176 | ERA707337 | Examination of Microbial Communities through a Freshwater/saltwater Transition Zone in Cenotes, Yucatan, Mexico | Other |
freshwater metagenome groundwater metagenome seawater metagenome sediment metagenome |
258.2M | University of California San Diego Microbiome Initiative | |
19 | ERP023684 | ERA962716 | Samples presented at EMP conference June 2011 Shenzhen | Other |
air metagenome freshwater metagenome groundwater metagenome insect metagenome metagenome soil metagenome |
7.1G | University of California San Diego Microbiome Initiative | |
20 | ERP103981 | ERA1078654 | In the first part of the experiment, naphthalene contaminated surface sediments, where effluent from the coal-tar contaminated groundwater surfaces, were incubated in situ with either 13C-labeled or natural abundance 13C-naphthalene at various dosing regimes. The dosing regimes correspond with 3 doses in a 24 hr timespan; 5 doses in a 72 hr timespan and 8 doses in 8 days. Shotgun metagenome libraries were prepared in triplicate from all 13C-labeled sediments following the enrichment for 13C-labeled DNA. Sediments fed natural abundance 12C-naphthalene were not replicated, but where exposed to the identical handling as DNA extracted from 13C-labeled sediment. In the second part of the experiment, groundwater was sampled from pristine ('upstream') and contaminated monitoring wells ('shallow','mid' and 'deep'). DNA was extracted directly from filters (5L of groundwater per well) and shotgun metagenomes were sequenced. This data corresponds with metaproteomic data from Hanson et al., 2015. | Other |
groundwater metagenome sediment metagenome |
132.6G | Cornell University |