FASTQExperiment Detail
| Title | Transcriptome analysis in Emiliania huxleyi CCMP2090, 25 degrees centigrade, 0 hours |
| Design Description | Emiliania huxleyi CCMP2090 cells were grown at 25 degrees centigrade for 0 hour. A cDNA library of cells at a time point (totally eight distinct libraries) was made. cDNA library was sequenced by the HiSeq 2000 sequencing technique. The expressed sequence tags (ESTs) were then mapped against Emiliania huxleyi CCMP2090 genome (Joint Genome Institute). Gene expression profiles were compared between cells under normal and cold conditions. |
| Organism | Emiliania huxleyi CCMP1516 |
Library Description
| Name | PPM01_T02 |
| Strategy | OTHER |
| Source | TRANSCRIPTOMIC |
| Selection | cDNA |
| Layout | SINGLE |
| Construction Protocol |
Platform
| Platform | ILLUMINA |
| Instrument Model | Illumina HiSeq 2000 |
Processing
| PipeSection (primary analysis) | |
|---|---|
| Step Index | 1 |
| Prev Step Index | NIL |
| Program | Hiseq Control Software |
| Version | 1.4.8 |
| PipeSection (primary analysis) | |
| Step Index | 2 |
| Prev Step Index | 1 |
| Program | Real Time Analysis |
| Version | 1.12.4 |
Spot Information
| Number of Reads per Spots | 0 |
| Spot Length | 100 |
Read Spec
| Read Index 0 | |
|---|---|
| Read Label | |
| Read Class | Application Read |
| Read Type | Forward |
| Base Coord | 1 |
