Project Detail : PRJDB8159

AccessionPRJDB8159
Project TypePrimary submission
Project Data TypeGenome Sequencing

General info

Project titleGenome sequence of rice core collection (WRC)
Project Description
Rice core collection (WRC) consists of 69 accessions and is resequenced in average depth =37x  by using the NGS technology. Mapping of the NGS reads to the Nipponbare reference genome is performed for the development of GWAS system with WRC. In addition, mapped information is also used for TASUKE system to visualize the haplotypes of each gene among WRC.
Release Date2020-02-27
RelevanceAgricultural

External Link 1

URLhttp://www.naro.affrc.go.jp/english/nics/databases/index.html
DescriptionInstitute of Crop Science, Database

Grant 1

AgencyNARO Genebank Project

Project Type

Sample scope/Material/Capture/Methodology

Sample ScopeMonoisolate
MaterialGenome
CaptureWhole
MethodologySequencing

Objective

ObjectiveRawSequenceReads

Target

Organism information

Organism nameOryza sativa
Taxonomy ID4530

General Properties

CellularityMulticellular
Haploid genome size400 Mb
PloidyDiploid