Project Detail : PRJDB8040

AccessionPRJDB8040
Project TypePrimary submission
Project Data TypeGenome Sequencing

General info

Project titleGut microbiota convert HMCA into HMPA in the intestine
Project Description
Male C57BL/6J mice were divided into two groups of similar average body weight [HFD-fed group and 4-hydroxy-3-methoxycinnamic acid (HMCA)-fed group to HFD] for 12 weeks in a factorial design. Cecums were collected at after treatments. Cecal DNA was extracted from frozen samples using the FastDNA SPIN Kit for Feces by following the manufacturer's instructions. Partial 16S rRNA gene sequences were amplified targeting the hypervariable regions V4 using 515F/806R primers. The amplicons were sequenced using an Illumina MiSeq with MiSeq Reagent 222 kit V3. The libraries were prepared following the Illumina protocol for 8pM: 'Preparing Libraries for Sequencing on the MiSeq'.
Release Date2019-08-19

Project Type

Sample scope/Material/Capture/Methodology

Sample ScopeMultiisolate
MaterialGenome
CaptureTargetedLocusLoci
MethodologySequencing

Objective

ObjectiveRawSequenceReads

Target

Organism information

Organism namemouse gut metagenome
Taxonomy ID410661

Project Publication

Publication 1

PubMed ID 31075850