Project Detail : PRJDB6444

AccessionPRJDB6444
Project TypePrimary submission
Project Data TypeGenome Sequencing

General info

Project titleWhole genome sequencing project of AM fungi Rhizophagus clarus HR1
Project Description
De novo genome sequencing of arbuscular mycorrhizal (AM) fungi Rhizophagus clarus HR1. Data is used for comparative analysis with model AM fungi R. irregularis in order to understand its symbiotic lifestyle such as auxotrophy and biosignaling. Final goal of our project is improving culture technics and enhancing agricultural use of AM fungi.
Release Date2018-06-01
RelevanceAgricultural

Grant 1

GrantIdJPMJAC1403
TitleMolecular Basis of Symbiotic Networks and its Application
Agency abbreviationJST
AgencyJapan Science and Technology Agency

Project Type

Sample scope/Material/Capture/Methodology

Sample ScopeMonoisolate
MaterialGenome
CaptureWhole
MethodologySequencing

Objective

ObjectiveRawSequenceReads, Assembly
Locus tag prefixRclHR1

Target

Organism information

Organism nameRhizophagus clarus
Taxonomy ID94130
Strain,breed,cultivarHR1

General Properties

CellularityMulticellular
Haploid genome size146 Mb
PloidyHaploid

Phenotype

Biotic RelationshipSymbiont
Trophic LevelHeterotroph

Ecological Environment

HabitatTerrestrial
SalinityNonHalophilic
Oxygen requirementAerobic
Temperature rangeMesophilic