Project Detail : PRJDB5706

AccessionPRJDB5706
Project TypePrimary submission
Project Data TypeGenome Sequencing

General info

Project titleGenome diversity and regional adaptation of rice
Project Description
A number of 7 cultivated rice genomes, which have been used as doners for the development of CSSLs are resequenced in depth (average coverage=52X) by using the NGS technology. Mapping of the NGS reads to the Nipponbare reference genome is performed for comparative genomics to characterize the sequence diversity for a number of heading-date related genes within the population of Asian cultivated rice . Our results provide important evidence for understanding of the evolutionary mechanisms and functional roles of these genes on the regional adaptation of rice cultivars.
Release Date2018-04-23
RelevanceAgricultural

External Link 1

URLhttp://www.naro.affrc.go.jp/english/nics/databases/index.html
DescriptionInstitute of Crop Science, Database

Grant 1

GrantIdQTL5003
TitleGenomics for Agricultural Innovation
Agency abbreviationMAFF
AgencyMinistry of Agriculture, Forestry and Fisheries of Japan

Project Type

Sample scope/Material/Capture/Methodology

Sample ScopeMonoisolate
MaterialGenome
CaptureWhole
MethodologySequencing

Objective

ObjectiveSequence

Target

Organism information

Organism nameOryza sativa
Taxonomy ID4530