Project Detail : PRJDB3479

AccessionPRJDB3479
Project TypePrimary submission
Project Data TypeMetagenome

General info

Project titleMetagenome analysis of picoeukaryotes from surface seawater
Project Description
Surface seawater was collected at two sampling sites in Sendai Bay (C5: 141.083W, 37.976N; C12: 141.317W, 37.974N), Miyagi, Japan on October 7 and December 1 in 2013. Suspended particles were concentrated to 100 fold and divided into two subsamples: (1) mixied with DMSO(5%) and frozen to sore in liquid nitrogen, (2) kept non-frozen. Picophytoplankton cells were sorted by flow cytometry. The genomic DNA was extracted and amplified by whole genome amplification. Partial 18S rRNA gene of the eukaryotes was amplified and sequenced using GS junior.
Release Date2016-06-24

Project Type

Sample scope/Material/Capture/Methodology

Sample ScopeEnvironment
MaterialPartialGenome
CaptureTargetedLocusLoci
MethodologySequencing

Objective

ObjectiveRawSequenceReads

Target

Organism information

Organism namealgae metagenome
Taxonomy ID1300146

Project Publication

Publication 1

PubMed ID26506442

Publication 2

PubMed ID27810875