Project Detail : PRJDB2897

AccessionPRJDB2897
Project TypePrimary submission
Project Data TypeTargeted Locus (Loci)

General info

Project titleSequencing of active retrotransposon insertion site to construct a linkage map in sweet potato
Project Description
Rtsp-1 is one of the active retrotransposon in sweet potato. In this project, its insertion sites were specifically sequenced in a mapping population derived from two different sweet potato cultivars. Our goal is to construct a linkage map using these insertion sites.
Release Date2015-11-12
RelevanceAgricultural

External Link 1

URLhttp://cropgenome.project.affrc.go.jp/kenkyu/koubo/sfc.html
DescriptionGenomics-based Technology for Agricultural Improvement

Grant 1

GrantIdSFC-3003
TitleGenomics-based Technology for Agricultural Improvement
Agency abbreviationMAFF
AgencyMinistry of Agriclture, Forestry, and Fisheries of Japan

Biomaterial provider

Biomaterial providerNational Agriculture and Food Research Organization, Kyusyu Okinawa Agricultural Research Center

Project Type

Sample scope/Material/Capture/Methodology

Sample ScopeMultiisolate
MaterialGenome
CaptureTargetedLocusLoci
MethodologySequencing

Objective

ObjectiveRawSequenceReads

Target

Organism information

Organism nameIpomoea batatas
Taxonomy ID4120
Strain,breed,cultivarPSL,90IDN-47 and F1 mapping population

Project Publication

Publication 1

PubMed ID26069444